HL_2ZJP_026

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

AGCUAACU

Length

8 nucleotides

Bulged bases

2ZJP|1|X|U|969, 2ZJP|1|X|C|972

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2ZJP_026 not in the Motif Atlas

Homologous match to HL_7RQB_027

Geometric discrepancy: 0.1492

The information below is about HL_7RQB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

2ZJP|1|X|A|966
2ZJP|1|X|G|967
2ZJP|1|X|C|968
2ZJP|1|X|U|969
2ZJP|1|X|A|970
2ZJP|1|X|A|971
2ZJP|1|X|C|972
2ZJP|1|X|U|973

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain J

50S RIBOSOMAL PROTEIN L16

Chain Z

5S ribosomal RNA; 5S rRNA