HL_2ZJP_028
3D structure
- PDB id
- 2ZJP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- CUUAGAAGCAG
- Length
- 11 nucleotides
- Bulged bases
- 2ZJP|1|X|A|1081
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_2ZJP_028 not in the Motif Atlas
- Homologous match to HL_6PRV_001
- Geometric discrepancy: 0.3537
- The information below is about HL_6PRV_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_20174.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
2ZJP|1|X|C|1075
2ZJP|1|X|U|1076
2ZJP|1|X|U|1077
2ZJP|1|X|A|1078
2ZJP|1|X|G|1079
2ZJP|1|X|A|1080
2ZJP|1|X|A|1081
2ZJP|1|X|G|1082
2ZJP|1|X|C|1083
2ZJP|1|X|A|1084
2ZJP|1|X|G|1085
Current chains
- Chain X
- RIBOSOMAL 23S RNA
Nearby chains
- Chain 5
- NOSIHEPTIDE
- Chain F
- 50S RIBOSOMAL PROTEIN L11
- Chain J
- 50S RIBOSOMAL PROTEIN L16
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