HL_2ZJP_045
3D structure
- PDB id
- 2ZJP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- GUUUACCAAAAUC
- Length
- 13 nucleotides
- Bulged bases
- 2ZJP|1|X|A|1771, 2ZJP|1|X|C|1772, 2ZJP|1|X|C|1773, 2ZJP|1|X|A|1777
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_2ZJP_045 not in the Motif Atlas
- Homologous match to HL_7A0S_045
- Geometric discrepancy: 0.1258
- The information below is about HL_7A0S_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50951.2
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
2ZJP|1|X|G|1767
2ZJP|1|X|U|1768
2ZJP|1|X|U|1769
2ZJP|1|X|U|1770
2ZJP|1|X|A|1771
2ZJP|1|X|C|1772
2ZJP|1|X|C|1773
2ZJP|1|X|A|1774
2ZJP|1|X|A|1775
2ZJP|1|X|A|1776
2ZJP|1|X|A|1777
2ZJP|1|X|U|1778
2ZJP|1|X|C|1779
Current chains
- Chain X
- RIBOSOMAL 23S RNA
Nearby chains
- Chain 2
- 50S RIBOSOMAL PROTEIN L34
- Chain A
- 50S RIBOSOMAL PROTEIN L2
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