HL_2ZJP_053

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GGUUGGAAAUC

Length

11 nucleotides

Bulged bases

2ZJP|1|X|U|2285

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2ZJP_053 not in the Motif Atlas

Homologous match to HL_7A0S_054

Geometric discrepancy: 0.5812

The information below is about HL_7A0S_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.4

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

2ZJP|1|X|G|2282
2ZJP|1|X|G|2283
2ZJP|1|X|U|2284
2ZJP|1|X|U|2285
2ZJP|1|X|G|2286
2ZJP|1|X|G|2287
2ZJP|1|X|A|2288
2ZJP|1|X|A|2289
2ZJP|1|X|A|2290
2ZJP|1|X|U|2291
2ZJP|1|X|C|2292

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain D

50S RIBOSOMAL PROTEIN L5

Chain Z

5S ribosomal RNA; 5S rRNA