HL_2ZJP_054

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CGCAAAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2ZJP_054 not in the Motif Atlas

Homologous match to HL_7A0S_055

Geometric discrepancy: 0.1629

The information below is about HL_7A0S_055

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

2ZJP|1|X|C|2303
2ZJP|1|X|G|2304
2ZJP|1|X|C|2305
2ZJP|1|X|A|2306
2ZJP|1|X|A|2307
2ZJP|1|X|A|2308
2ZJP|1|X|G|2309
2ZJP|1|X|G|2310

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain D

50S RIBOSOMAL PROTEIN L5

Chain T

50S RIBOSOMAL PROTEIN L27