HL_2ZJP_059

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UGAAGAAG

Length

8 nucleotides

Bulged bases

2ZJP|1|X|G|2508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2ZJP_059 not in the Motif Atlas

Homologous match to HL_7A0S_060

Geometric discrepancy: 0.1265

The information below is about HL_7A0S_060

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_46665.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

2ZJP|1|X|U|2507
2ZJP|1|X|G|2508
2ZJP|1|X|A|2509
2ZJP|1|X|A|2510
2ZJP|1|X|G|2511
2ZJP|1|X|A|2512
2ZJP|1|X|A|2513
2ZJP|1|X|G|2514

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain 4

50S RIBOSOMAL PROTEIN L36

Chain E

50S RIBOSOMAL PROTEIN L6