HL_2ZJP_060

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CUGUUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2ZJP_060 not in the Motif Atlas

Homologous match to HL_7A0S_061

Geometric discrepancy: 0.1654

The information below is about HL_7A0S_061

Detailed Annotation

LSU A loop

Broad Annotation

LSU A loop

Motif group

HL_48677.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

24

Unit IDs

2ZJP|1|X|C|2530
2ZJP|1|X|U|2531
2ZJP|1|X|G|2532
2ZJP|1|X|U|2533
2ZJP|1|X|U|2534
2ZJP|1|X|C|2535
2ZJP|1|X|G|2536

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains