HL_2ZJR_071

3D structure

PDB id

2ZJR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.91 Å

Loop

Sequence

GUUGGAAAU

Length

9 nucleotides

Bulged bases

2ZJR|1|X|U|2285

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2ZJR_071 not in the Motif Atlas

Homologous match to HL_7A0S_076

Geometric discrepancy: 0.591

The information below is about HL_7A0S_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02452.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

8

Unit IDs

2ZJR|1|X|G|2283
2ZJR|1|X|U|2284
2ZJR|1|X|U|2285
2ZJR|1|X|G|2286
2ZJR|1|X|G|2287
2ZJR|1|X|A|2288
2ZJR|1|X|A|2289
2ZJR|1|X|A|2290
2ZJR|1|X|U|2291

Current chains

Chain X

ribosomal 23S RNA

Nearby chains

Chain D

50S ribosomal protein L5