Motif HL_02452.1 Version HL_02452.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 5-8 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_9DFE_198 | 9DFE | 0.2345 | 0 | 1A | LSU rRNA | G | 2304 | A | 2305 | C | 2306 | G | 2307 | G | 2308 | A | 2309 | A | 2310 | A | 2311 | U | 2312 | ncWWa | |
| 2 | HL_9E6Q_072 | 9E6Q | 0.2215 | 0 | 1 | LSU rRNA | G | 2416 | U | 2417 | C | 2418 | A | 2419 | G | 2420 | A | 2421 | A | 2422 | A | 2423 | U | 2424 | ncWWa | |
| 3 | HL_8B0X_101 | 8B0X | 0.1868 | 0 | a | LSU rRNA | G | 2308 | U | 2309 | C | 2310 | G | 2311 | G | 2312 | A | 2313 | C | 2314 | A | 2315 | U | 2316 | cWWa | cWH |
| 4 | HL_4V9F_057 | 4V9F | 0.1538 | 0 | 0 | LSU rRNA | G | 2338 | A | 2339 | C | 2340 | A | 2341 | G | 2342 | A | 2343 | G | 2344 | A | 2345 | C | 2346 | cWW | cWH |
| 5 | HL_8GLP_061 | 8GLP | 0.0000 | 0 | L5 | LSU rRNA | G | 4250 | A | 4251 | C | 4252 | A | 4253 | G | 4254 | A | 4255 | A | 4256 | A | 4257 | C | 4258 | cWW | cWH |
| 6 | HL_8P9A_167 | 8P9A | 0.1665 | 0 | AR | LSU rRNA | A | 2673 | A | 2674 | C | 2675 | A | 2676 | G | 2677 | A | 2678 | A | 2679 | A | 2680 | U | 2681 | cWW | cWH |
| 7 | HL_8OI5_052 | 8OI5 | 0.1464 | 0 | 1 | LSU rRNA | A | 2645 | A | 2646 | C | 2647 | A | 2648 | G | 2649 | A | 2650 | A | 2651 | A | 2652 | U | 2653 | cWW | cWH |
| 8 | HL_7A0S_076 | 7A0S | 0.7044 | 0 | X | LSU rRNA | G | 2283 | U | 2284 | U | 2285 | G | 2286 | G | 2287 | A | 2288 | A | 2289 | A | 2290 | U | 2291 | ncWWa |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AACAGAAAU | 2 |
| GACGGAAAU | 1 |
| GUCAGAAAU | 1 |
| GUCGGACAU | 1 |
| GACAGAGAC | 1 |
| GACAGAAAC | 1 |
| GUUGGAAAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| ACAGAAA | 3 |
| ACGGAAA | 1 |
| UCAGAAA | 1 |
| UCGGACA | 1 |
| ACAGAGA | 1 |
| UUGGAAA | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (8)
- Basepair signature
- cWW-F-cWH-F-F-F-F
- Heat map statistics
- Min 0.11 | Avg 0.30 | Max 0.75
Coloring options: