HL_2ZM5_004

3D structure

PDB id

2ZM5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe)

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CAGUCGGUAG

Length

10 nucleotides

Bulged bases

2ZM5|1|D|C|17, 2ZM5|1|D|G|18, 2ZM5|1|D|G|19, 2ZM5|1|D|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2ZM5_004 not in the Motif Atlas

Homologous match to HL_3TUP_001

Geometric discrepancy: 0.158

The information below is about HL_3TUP_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_45175.1

Basepair signature

cWW-cWS-F-F

Number of instances in this motif group

5

Unit IDs

2ZM5|1|D|C|13
2ZM5|1|D|A|14
2ZM5|1|D|G|15
2ZM5|1|D|U|16
2ZM5|1|D|C|17
2ZM5|1|D|G|18
2ZM5|1|D|G|19
2ZM5|1|D|U|20
2ZM5|1|D|A|21
2ZM5|1|D|G|22

Current chains

Chain D

tRNA(Phe)

Nearby chains