HL_300D_001

3D structure

PDB id

300D (explore in PDB, NAKB, or RNA 3D Hub)

Description

CAPTURING THE STRUCTURE OF A CATALYTIC RNA INTERMEDIATE: RNA HAMMERHEAD RIBOZYME, MN(II)-SOAKED

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGUAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_300D_001 not in the Motif Atlas

Geometric match to HL_359D_001

Geometric discrepancy: 0.1567

The information below is about HL_359D_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

300D|1|B|C|154
300D|1|B|G|31|||L
300D|1|B|U|32|||L
300D|1|B|A|33|||L
300D|1|B|A|34|||L
300D|1|B|G|164

Current chains

Chain B

RNA HAMMERHEAD RIBOZYME

Nearby chains

Chain A

RNA HAMMERHEAD RIBOZYME