HL_30QZ_014

3D structure

PDB id

30QZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome with peptidyl-tRNA and Hsp15

Experimental method

ELECTRON MICROSCOPY

Resolution

2.23 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

30QZ|1|a|G|329, 30QZ|1|a|A|330, 30QZ|1|a|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_30QZ_014 not in the Motif Atlas

Homologous match to HL_7A0S_012

Geometric discrepancy: 0.3763

The information below is about HL_7A0S_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.6

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

17

Unit IDs

30QZ|1|a|G|327
30QZ|1|a|U|328
30QZ|1|a|G|329
30QZ|1|a|A|330
30QZ|1|a|C|331
30QZ|1|a|A|332
30QZ|1|a|G|333
30QZ|1|a|C|334
30QZ|1|a|C|335

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain t

Large ribosomal subunit protein uL24