HL_30QZ_016

3D structure

PDB id

30QZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome with peptidyl-tRNA and Hsp15

Experimental method

ELECTRON MICROSCOPY

Resolution

2.23 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

30QZ|1|a|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_30QZ_016 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.111

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

30QZ|1|a|G|410
30QZ|1|a|G|411
30QZ|1|a|A|412
30QZ|1|a|C|413
30QZ|1|a|C|414
30QZ|1|a|A|415
30QZ|1|a|U|416
30QZ|1|a|C|417

Current chains

Chain a

23S rRNA

Nearby chains

Chain k

Large ribosomal subunit protein uL15