HL_30QZ_053

3D structure

PDB id

30QZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome with peptidyl-tRNA and Hsp15

Experimental method

ELECTRON MICROSCOPY

Resolution

2.23 Å

Loop

Sequence

UGCAAUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_30QZ_053 not in the Motif Atlas

Homologous match to HL_7A0S_055

Geometric discrepancy: 0.2002

The information below is about HL_7A0S_055

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

30QZ|1|a|U|2324
30QZ|1|a|G|2325
30QZ|1|a|C|2326
30QZ|1|a|A|2327
30QZ|1|a|A|2328
30QZ|1|a|U|2329
30QZ|1|a|G|2330
30QZ|1|a|G|2331

Current chains

Chain a

23S rRNA

Nearby chains

Chain f

Large ribosomal subunit protein uL5

Chain l

Large ribosomal subunit protein uL16

Chain v

Large ribosomal subunit protein bL27