HL_30RA_041

3D structure

PDB id

30RA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with peptidyl-tRNA, mRNA and Hsp15

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

30RA|1|a|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_30RA_041 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.1249

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.5

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

30RA|1|a|C|305
30RA|1|a|U|306
30RA|1|a|G|307
30RA|1|a|G|308
30RA|1|a|A|309
30RA|1|a|A|310
30RA|1|a|A|311
30RA|1|a|G|312

Current chains

Chain a

23S rRNA

Nearby chains

Chain t

Large ribosomal subunit protein uL24