HL_30RA_087

3D structure

PDB id

30RA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with peptidyl-tRNA, mRNA and Hsp15

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

30RA|1|a|A|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_30RA_087 not in the Motif Atlas

Homologous match to HL_7A0S_058

Geometric discrepancy: 0.1946

The information below is about HL_7A0S_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51853.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

30RA|1|a|U|2404
30RA|1|a|G|2405
30RA|1|a|A|2406
30RA|1|a|A|2407
30RA|1|a|U|2408
30RA|1|a|G|2409
30RA|1|a|G|2410
30RA|1|a|A|2411
30RA|1|a|A|2412
30RA|1|a|G|2413

Current chains

Chain a

23S rRNA

Nearby chains

Chain k

Large ribosomal subunit protein uL15