HL_30RB_038

3D structure

PDB id

30RB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with peptidyl-tRNA and Hsp15

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

30RB|1|a|A|196, 30RB|1|a|A|199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_30RB_038 not in the Motif Atlas

Homologous match to HL_7A0S_006

Geometric discrepancy: 0.085

The information below is about HL_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02262.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

36

Unit IDs

30RB|1|a|G|194
30RB|1|a|A|195
30RB|1|a|A|196
30RB|1|a|A|197
30RB|1|a|C|198
30RB|1|a|A|199
30RB|1|a|U|200
30RB|1|a|C|201

Current chains

Chain a

23S rRNA

Nearby chains

Chain k

Large ribosomal subunit protein uL15

Chain w

Large ribosomal subunit protein bL28