HL_38JD_004

3D structure

PDB id

38JD (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNA polymerase ribozyme 85h34 replication complex, subclass 2 structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

CAGGGAGG

Length

8 nucleotides

Bulged bases

38JD|1|A|A|63

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_38JD_004 not in the Motif Atlas

Geometric match to HL_3HHN_009

Geometric discrepancy: 0.1706

The information below is about HL_3HHN_009

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

38JD|1|A|C|62
38JD|1|A|A|63
38JD|1|A|G|64
38JD|1|A|G|65
38JD|1|A|G|66
38JD|1|A|A|67
38JD|1|A|G|68
38JD|1|A|G|69

Current chains

Chain A

RNA polymerase ribozyme 85h34

Nearby chains