HL_3ADB_006

3D structure

PDB id

3ADB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of O-phosphoseryl-tRNA kinase complexed with selenocysteine tRNA and AMPPNP (crystal type 1)

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

ACUUCAGAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3ADB_006 not in the Motif Atlas

Homologous match to HL_3W3S_002

Geometric discrepancy: 0.5889

The information below is about HL_3W3S_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_81376.3

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

43

Unit IDs

3ADB|1|D|A|31
3ADB|1|D|C|32
3ADB|1|D|U|33
3ADB|1|D|U|34
3ADB|1|D|C|35
3ADB|1|D|A|36
3ADB|1|D|G|37
3ADB|1|D|A|38
3ADB|1|D|U|39

Current chains

Chain D

selenocysteine tRNA

Nearby chains