HL_3AM1_006

3D structure

PDB id

3AM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of O-Phosphoseryl-tRNA kinase complexed with anticodon-stem/loop truncated tRNA(Sec)

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_43074.16

Basepair signature

cWW-tSH-R-R

Number of instances in this motif group

272

Unit IDs

3AM1|1|B|C|32||||5_555
3AM1|1|B|U|33||||5_555
3AM1|1|B|U|34||||5_555
3AM1|1|B|C|35||||5_555
3AM1|1|B|G|36||||5_555
3AM1|1|B|G|37||||5_555

Current chains

Chain B

ASL-truncated tRNA

Nearby chains

Chain A

L-seryl-tRNA(Sec) kinase