Motif HL_43074.16 Version HL_43074.16 of this group appears in releases 3.60 to 3.61

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6	1-6	2-4	2-5	2-6
1	HL_5TBW_039	5TBW	0.7004	0	Other HL	1	LSU rRNA	A	1760	C	1761	C	1762	U	1763	U	1764	U	1765	cWW			ncWW
2	HL_5J7L_180	5J7L	0.7143	0	Other HL	DA	LSU rRNA	C	1868	G	1869	C	1870	A	1871	A	1872	G	1873	cWW		ntSH
3	HL_4V9F_022	4V9F	0.6284	0	Other HL	0	LSU rRNA	U	733	U	734	C	735	A	736	A	737	G	738	cWW		ntSH
4	HL_5DDO_003	5DDO	0.5693	0	GNRA with GA tSW pair	B	L-glutamine riboswitch (58-MER)	G	11	G	12	A	13	A	14	A	15	C	16	cWW		ntSW
5	HL_5VW1_003	5VW1	0.5196	0	GNRA with GA tSW pair	C	sgRNA	U	72	G	73	A	74	A	75	A	76	A	77	cWW		ntSS
6	HL_4ZT0_006	4ZT0	0.5178	0	GNRA with GA tSW pair	D	single-guide RNA	U	72	G	73	A	74	A	75	A	76	A	77	cWW		ntSW
7	HL_6MJ0_008	6MJ0	0.5643	0	GNRA with GA tSW pair	B	tRNA-like 3' UTR element	C	49	G	50	A	51	A	52	A	53	G	54	cWW		ntSW
8	HL_4WF9_034	4WF9	0.5172	0	Other HL	X	LSU rRNA	C	1400	G	1401	A	1402	C	1403	A	1404	G	1405	cWW		ntSH
9	HL_5J7L_167	5J7L	0.4786	0	Other HL	DA	LSU rRNA	C	1363	G	1364	A	1365	A	1366	A	1367	G	1368	cWW		ntSH
10	HL_7RQB_035	7RQB	0.4739	0		1A	LSU rRNA	C	1363	G	1364	A	1365	A	1366	A	1367	G	1368	cWW		ntSH
11	HL_7A0S_034	7A0S	0.6173	0		X	LSU rRNA	C	1376	G	1377	A	1378	A	1379	C	1380	G	1381	cWW
12	HL_4V88_222	4V88	0.5512	0	Other HL	A6	SSU rRNA	G	1778	U	1779	G	1780	A	1781	A	1782	C	1783	cWW
13	HL_5TBW_033	5TBW	0.4458	0	Other HL	1	LSU rRNA	G	1544	A	1545	A	1546	G	1547	C	1548	U	1549	cWW
14	HL_4QK9_001	4QK9	0.4495	0	Other HL	A	C-di-AMP riboswitch	C	14	U	15	G	16	A	17	A	18	G	19	cWW
15	HL_1U6B_004	1U6B	0.4514	0	Other HL	B	197-MER	C	153	A	154	A	155	A	156	C	157	G	158	cWW
16	HL_4V88_188	4V88	0.5398	1	Other HL	A6	SSU rRNA	G	154	U	155	A	156	A	157	U	158	C	160	cWW
17	HL_5J7L_164	5J7L	0.5640	0	Other HL	DA	LSU rRNA	U	1222	G	1223	U	1224	G	1225	A	1226	G	1227	cWW		ntSH
18	HL_1L9A_001	1L9A	0.4728	0	Other HL	B	signal recognition particle RNA S domain	G	146	G	147	G	148	A	149	G	150	C	151	cWW		ntSH
19	HL_1JID_001	1JID	0.4702	0	Other HL	B	HELIX 6 OF HUMAN SRP RNA	G	146	G	147	G	148	A	149	G	150	C	151	cWW
20	HL_1MFQ_001	1MFQ	0.4976	0	Other HL	A	SRP RNA	G	146	G	147	G	148	A	149	G	150	C	151	cWW
21	HL_6UFG_005	6UFG	0.4195	0	Other HL	A	RNA (166-MER)	C	144	G	145	A	146	A	147	A	148	G	149	cWW		ntSH
22	HL_6CZR_087	6CZR	0.3818	0	Other HL	1a	SSU rRNA	C	710	G	711	A	712	A	713	G	714	G	715	cWW		ntSH
23	HL_5J7L_016	5J7L	0.3475	0	Other HL	AA	SSU rRNA	C	726	G	727	A	728	A	729	G	730	G	731	cWW		ntSH
24	HL_4LFB_016	4LFB	0.3963	0	Other HL	A	SSU rRNA	C	726	G	727	A	728	A	729	G	730	G	731	cWW		ntSH
25	HL_1G1X_005	1G1X	0.3768	0	Other HL	J	16S RIBOSOMAL RNA	C	726	G	727	A	728	A	729	G	730	G	731	cWW		ntSH
26	HL_1G1X_003	1G1X	0.3863	0	Other HL	E	16S RIBOSOMAL RNA	C	726	G	727	A	728	A	729	G	730	G	731	cWW		ntSH
27	HL_4OQU_004	4OQU	0.3410	0	Other HL	A	SAM-I/IV riboswitch	C	76	G	77	A	78	G	79	A	80	G	81	cWW		ntSH
28	HL_6SVS_001	6SVS	0.3210	0		A	RNA (79-mer)	C	26	G	27	A	28	A	29	A	30	G	31	cWW		ntSH
29	HL_4V88_207	4V88	0.3716	0	Other HL	A6	SSU rRNA	C	937	G	938	A	939	A	940	A	941	G	942	cWW		ntSH
30	HL_5J7L_190	5J7L	0.3299	0	Other HL	DA	LSU rRNA	U	2356	G	2357	A	2358	C	2359	G	2360	G	2361	cWW		ntSH
31	HL_5TBW_059	5TBW	0.3095	0	GNRA	1	LSU rRNA	U	2744	G	2745	A	2746	A	2747	A	2748	G	2749	cWW		ntSH
32	HL_7RQB_047	7RQB	0.3242	0		1A	LSU rRNA	U	1864	G	1865	C	1866	A	1876	A	1877	G	1878	cWW		ntSH
33	HL_5TBW_016	5TBW	0.3319	0	GNRA	1	LSU rRNA	U	707	G	708	A	709	A	710	A	711	G	712	cWW		ntSH
34	HL_6CU1_002	6CU1	0.2833	0	GNRA	A	Y RNA-like	C	42	G	43	A	44	A	45	A	46	G	47	cWW		ntSH
35	HL_3SUX_002	3SUX	0.2192	0	GNRA	X	THF riboswitch	C	65	G	66	A	67	A	68	A	69	G	70	cWW		ntSH
36	HL_3SUX_004	3SUX	0.2192	0	GNRA	X	THF riboswitch	C	65\|\|\|\|17_555	G	66\|\|\|\|17_555	A	67\|\|\|\|17_555	A	68\|\|\|\|17_555	A	69\|\|\|\|17_555	G	70\|\|\|\|17_555	cWW		ntSH
37	HL_6UFG_004	6UFG	0.1903	0	GNRA	A	RNA (166-MER)	C	105	G	106	A	107	A	108	A	109	G	110	cWW		tSH
38	HL_3E5C_002	3E5C	0.3070	0	GNRA	A	SMK box (SAM-III) Riboswitch	C	41	G	42	A	43	A	44	A	45	G	46	cWW		ntSH
39	HL_4PQV_001	4PQV	0.3527	0	GNRA	A	Flavivirus 3' UTR stem loop IV	C	13	G	14	A	15	A	16	A	17	G	18	cWW		ntSH
40	HL_2ZZM_003	2ZZM	0.2923	0	GNRA	B	RNA (84-MER)	C	47	G	47\|\|\|A	U	47\|\|\|B	A	47\|\|\|C	G	47\|\|\|D	G	47\|\|\|E	cWW		ntSH
41	HL_6CB3_006	6CB3	0.2823	0	GNRA	B	RNA (99-MER)	C	76	G	77	A	78	A	79	A	80	G	81	cWW		ntSH
42	HL_4P95_006	4P95	0.2709	0	GNRA	A	RNA (192-MER)	C	567	G	568	A	569	A	570	A	571	G	572	cWW		ntSH
43	HL_5J7L_191	5J7L	0.2388	0	GNRA	DA	LSU rRNA	C	2374	G	2375	A	2376	A	2377	A	2378	G	2379	cWW		ntSH
44	HL_7A0S_070	7A0S	0.3302	0		Y	5S rRNA	C	88	G	89	C	90	A	91	G	92	G	93	cWW		ntSH
45	HL_4WF9_020	4WF9	0.2375	0	GNRA	X	LSU rRNA	C	674	G	675	A	676	A	677	A	678	G	679	cWW		ntSH
46	HL_4WF9_054	4WF9	0.2170	0	GNRA	X	LSU rRNA	C	2401	G	2402	A	2403	A	2404	A	2405	G	2406	cWW		ntSH
47	HL_6CZR_095	6CZR	0.3331	0	GNRA	1a	SSU rRNA	C	1059	G	1060	U	1061	G	1062	A	1063	G	1064	cWW		ntSH
48	HL_7A0S_020	7A0S	0.2548	0		X	LSU rRNA	C	640	G	641	A	642	A	643	A	644	G	645	cWW		ntSH
49	HL_4V9F_060	4V9F	0.2417	0	GNRA	0	LSU rRNA	C	2411	G	2412	A	2413	A	2414	A	2415	G	2416	cWW		ntSH
50	HL_6JQ5_002	6JQ5	0.2462	0	GNRA	A	RNA (82-MER)	C	45	G	46	A	47	A	48	A	49	G	50	cWW		ntSH
51	HL_6DME_001	6DME	0.2488	0	GNRA	A	ppGpp Riboswitch	C	25	G	26	A	27	G	28	A	29	G	30	cWW		ntSH
52	HL_4LVW_002	4LVW	0.3633	0	GNRA	A	THF riboswitch	C	58	G	59	A	60	G	61	A	62	G	63	cWW		ntSH
53	HL_3W3S_007	3W3S	0.3297	0	GNRA	B	Selenocysteine transfer RNA	C	47\|\|\|F\|43_455	G	47\|\|\|G\|43_455	C	47\|\|\|H\|43_455	A	47\|\|\|I\|43_455	A	47\|\|\|J\|43_455	G	47\|\|\|K\|43_455	cWW		ntSH
54	HL_3W3S_003	3W3S	0.3297	0	GNRA	B	Selenocysteine transfer RNA	C	47\|\|\|F	G	47\|\|\|G	C	47\|\|\|H	A	47\|\|\|I	A	47\|\|\|J	G	47\|\|\|K	cWW		ntSH
55	HL_5TBW_030	5TBW	0.4140	0	GNRA	1	LSU rRNA	C	1403	G	1404	U	1405	A	1406	A	1407	G	1408	cWW		ntSH
56	HL_5J7L_023	5J7L	0.3883	0	GNRA	AA	SSU rRNA	U	1076	G	1077	U	1078	G	1079	A	1080	A	1081	cWW		ntSH
57	HL_4LFB_024	4LFB	0.3804	0	GNRA	A	SSU rRNA	C	1076	G	1077	U	1078	G	1079	A	1080	G	1081	cWW		ntSH
58	HL_5J7L_027	5J7L	0.3866	0	GNRA	AA	SSU rRNA	C	1265	G	1266	C	1267	G	1268	A	1269	G	1270	cWW		ntSH
59	HL_7RQB_069	7RQB	0.3395	0		1A	LSU rRNA	C	2856	G	2857	C	2858	G	2859	A	2860	G	2861	cWW		ntSH
60	HL_5TBW_064	5TBW	0.2899	0	GNRA	1	LSU rRNA	C	2963	G	2964	U	2965	G	2966	A	2967	G	2968	cWW		ntSH
61	HL_5J7L_196	5J7L	0.2998	0	GNRA	DA	LSU rRNA	C	2594	G	2595	U	2596	G	2597	A	2598	G	2599	cWW		ntSH
62	HL_4V9F_065	4V9F	0.3189	0	GNRA	0	LSU rRNA	C	2629	G	2630	U	2631	G	2632	A	2633	G	2634	cWW		ntSH
63	HL_4V9F_017	4V9F	0.3390	0	GNRA	0	LSU rRNA	C	576	G	577	C	578	G	579	A	580	G	581	cWW		ntSH
64	HL_4YAZ_003	4YAZ	0.3289	0	GNRA	R	Cyclic di-GMP-I riboswitch	C	25	G	26	C	27	G	28	A	29	G	30	cWW		ntSH
65	HL_7RQB_032	7RQB	0.3559	0		1A	LSU rRNA	C	1222	G	1223	C	1224	G	1225	A	1226	G	1227	cWW		ntSH
66	HL_7A0S_015	7A0S	0.3268	0		X	LSU rRNA	C	473	G	474	U	475	G	476	A	477	G	478	cWW		ntSH
67	HL_4V9F_015	4V9F	0.3261	0	GNRA	0	LSU rRNA	U	468	G	469	U	470	G	471	A	472	A	473	cWW		ntSH
68	HL_3NKB_002	3NKB	0.3066	0	GNRA	B	The hepatitis delta virus ribozyme	C	49	G	50	A	51	A	52	A	53	G	54	cWW		ntSH
69	HL_3NPQ_001	3NPQ	0.3167	0	GNRA	A	S-ADENOSYLHOMOCYSTEINE RIBOSWITCH	C	20	G	21	A	22	G	23	A	24	G	25	cWW		ntSH
70	HL_2OIU_003	2OIU	0.2777	0	GNRA	P	L1 Ribozyme RNA Ligase	C	59	G	60	A	61	A	62	A	63	G	64	cWW		ntSH
71	HL_4QK9_002	4QK9	0.2961	0	GNRA	A	C-di-AMP riboswitch	C	56	G	57	U	58	A	59	A	60	G	61	cWW		ntSH
72	HL_5J7L_147	5J7L	0.2747	0	GNRA	DA	LSU rRNA	C	462	G	463	U	464	G	465	A	466	G	467	cWW		ntSH
73	HL_7RQB_015	7RQB	0.2777	0		1A	LSU rRNA	C	462	G	463	U	464	G	465	A	466	G	467	cWW		ntSH
74	HL_4WF9_015	4WF9	0.2996	0	GNRA	X	LSU rRNA	C	508	G	509	U	510	G	511	A	512	G	513	cWW		ntSH
75	HL_7A0S_062	7A0S	0.3073	0		X	LSU rRNA	C	2573	G	2574	U	2575	G	2576	A	2577	G	2578	cWW		tSH
76	HL_7RQB_063	7RQB	0.3068	0		1A	LSU rRNA	C	2594	G	2595	U	2596	G	2597	A	2598	G	2599	cWW		tSH
77	HL_4WF9_059	4WF9	0.3749	0	GNRA	X	LSU rRNA	C	2621	G	2622	U	2623	G	2624	A	2625	G	2626	cWW		ntSH
78	HL_2BTE_003	2BTE	0.4118	0	GNRA	B	tRNA	C	46	G	47	C	47\|\|\|A	A	47\|\|\|B	A	47\|\|\|C	G	47\|\|\|D	cWW		ntSH
79	HL_4V9F_033	4V9F	0.4368	0	GNRA	0	LSU rRNA	C	1326	G	1327	A	1328	G	1329	A	1330	G	1331	cWW		ntSH
80	HL_6UFH_004	6UFH	0.3623	0	Other HL	A	RNA (167-MER)	C	106	G	107	A	108	A	109	A	110	G	111	cWW		ntSH
81	HL_5U3G_002	5U3G	0.2715	0	GNRA	B	Guanidine-I riboswitch	C	47	G	48	A	49	A	50	A	51	G	52	cWW		tSH
82	HL_4C7O_001	4C7O	0.3666	0	Other HL	E	SRP RNA	C	19	G	20	G	21	A	22	A	23	G	24	cWW		ntSH
83	HL_1G1X_004	1G1X	0.3912	0	Other HL	I	16S RIBOSOMAL RNA	C	590	G	591	A	592	A	593	A	594	G	649	cWW
84	HL_4V9F_045	4V9F	0.2195	1	GNRA	0	LSU rRNA	C	1793	G	1794	G	1795	A	1796	A	1797	G	1799	cWW		ntSH
85	HL_7A0S_047	7A0S	0.2991	0		X	LSU rRNA	U	1856	G	1857	C	1858	A	1859	A	1860	G	1861	cWW		ntSH
86	HL_6CZR_081	6CZR	0.2315	0	GNRA	1a	SSU rRNA	C	375	G	376	C	377	A	378	A	379	G	380	cWW		ntSH
87	HL_7RQB_071	7RQB	0.2673	0		1B	5S rRNA	G	86	G	87	C	88	G	89	A	90	C	91	cWW		ntSH
88	HL_5TBW_036	5TBW	0.3615	0	GNRA	1	LSU rRNA	G	1634	G	1635	U	1636	A	1637	A	1638	C	1639	cWW		ntSH
89	HL_4V88_214	4V88	0.3146	0	GNRA	A6	SSU rRNA	A	1296	G	1297	U	1298	G	1299	A	1300	U	1301	cWW		ntSH
90	HL_5TBW_010	5TBW	0.2746	0	Other HL	1	LSU rRNA	A	357	G	358	U	359	G	360	A	361	U	362	cWW		ntSH
91	HL_4WFL_003	4WFL	0.2451	0	GNRA	A	LSRP RNA	G	81	G	82	U	83	A	84	A	85	C	86	cWW		ntSH
92	HL_3G9C_008	3G9C	0.2434	0	GNRA	Q	GLMS RIBOZYME	G	108	G	109	U	110	G	111	A	112	C	113	cWW		ntSH
93	HL_2Z75_004	2Z75	0.3104	0	GNRA	B	glmS ribozyme	G	113	G	114	C	115	G	116	A	117	C	118	cWW		ntSH
94	HL_3IGI_003	3IGI	0.2782	0	GNRA	A	Group IIC intron	G	89	G	90	C	91	G	92	A	93	C	94	cWW		ntSH
95	HL_4WF9_065	4WF9	0.2993	0	Other HL	X	LSU rRNA	G	2876	G	2877	U	2878	G	2879	A	2880	C	2881	cWW		ntSH
96	HL_4LFB_028	4LFB	0.2619	0	Other HL	A	SSU rRNA	G	1265	G	1266	C	1267	A	1268	A	1269	C	1270	cWW		ntSH
97	HL_5J7L_202	5J7L	0.2469	0	Other HL	DA	LSU rRNA	A	2856	G	2857	C	2858	G	2859	A	2860	U	2861	cWW		ntSH
98	HL_7A0S_068	7A0S	0.2537	0		X	LSU rRNA	A	2831	G	2832	C	2833	A	2834	A	2835	U	2836	cWW		ntSH
99	HL_1U9S_002	1U9S	0.2499	0	GNRA	A	RIBONUCLEASE P	G	99	G	100	U	101	A	102	A	103	C	104	cWW		ntSH
100	HL_5FQ5_001	5FQ5	0.2576	0	GNRA	A	SGRNA	A	32	G	33	A	34	A	35	A	36	U	37	cWW		ntSH
101	HL_1U9S_004	1U9S	0.2265	0	GNRA	A	RIBONUCLEASE P	G	204	G	205	C	206	A	207	A	208	C	209	cWW		tSH
102	HL_7A0S_057	7A0S	0.2217	0		X	LSU rRNA	G	2353	G	2354	A	2355	A	2356	A	2357	C	2358	cWW		ntSH
103	HL_7RQB_020	7RQB	0.2233	0		1A	LSU rRNA	G	629	G	630	A	631	A	632	A	633	C	634	cWW		ntSH
104	HL_5J7L_152	5J7L	0.1942	0	GNRA	DA	LSU rRNA	G	629	G	630	A	631	A	632	A	633	C	634	cWW		ntSH
105	HL_5B2T_001	5B2T	0.1546	0	GNRA	A	Guide RNA	A	32	G	33	A	34	A	35	A	36	U	37	cWW		ntSH
106	HL_6N2V_001	6N2V	0.1649	0	GNRA	A	X. oryzae Mn riboswitch optimized construct	G	24	G	25	A	26	A	27	A	28	C	29	cWW		ntSH
107	HL_6U8D_002	6U8D	0.1770	0	GNRA	A	JIIIabc RNA (68-MER)	G	180	G	198	A	199	A	200	A	201	C	219	cWW		ntSH
108	HL_6CB3_005	6CB3	0.2227	0	GNRA	B	RNA (99-MER)	G	50	G	51	A	52	A	53	A	54	C	55	cWW		ntSH
109	HL_4OQU_001	4OQU	0.2017	0	GNRA	A	SAM-I/IV riboswitch	G	13	G	14	A	15	G	16	A	17	C	18	cWW		ntSH
110	HL_5F9F_003	5F9F	0.2344	0	GNRA	F	RNA (24-mer)	A	10	G	11	U	12	G	13	A	14	U	15	cWW		ntSH
111	HL_5TBW_186	5TBW	0.1884	0	GNRA	AS	5S rRNA	G	88	G	89	U	90	G	91	A	92	C	93	cWW		tSH
112	HL_1UN6_004	1UN6	0.1584	0	GNRA	F	5S RIBOSOMAL RNA	G	82	G	83	A	84	A	85	A	86	C	94	cWW		ntSH
113	HL_6JOO_001	6JOO	0.1510	0	GNRA	B	Guide RNA	G	32	G	33	A	34	A	35	A	36	C	37	cWW		tSH
114	HL_6UFH_002	6UFH	0.1865	0	GNRA	A	RNA (167-MER)	G	45	G	46	A	47	A	48	A	49	C	50	cWW		ntSH
115	HL_5VW1_001	5VW1	0.1458	0	GNRA	C	sgRNA	A	32	G	33	A	34	A	35	A	36	U	37	cWW		ntSH
116	HL_4V88_210	4V88	0.1933	0	Other HL	A6	SSU rRNA	A	1084	G	1085	A	1086	A	1087	A	1088	U	1089	cWW		ntSH
117	HL_5TBW_048	5TBW	0.2267	0	Other HL	1	LSU rRNA	A	2220	G	2221	A	2222	A	2223	A	2224	U	2225	cWW		ntSH
118	HL_4Y1M_004	4Y1M	0.2346	0	Other HL	B	E. coli yybP-ykoY riboswitch	A	81	G	82	A	83	A	84	A	85	U	86	cWW		tSH
119	HL_6CZR_074	6CZR	0.3175	0	GNRA	1a	SSU rRNA	G	153	G	154	A	155	A	156	A	157	C	158	cWW		tSH
120	HL_4V9F_040	4V9F	0.2168	0	GNRA	0	LSU rRNA	G	1628	G	1629	A	1630	A	1631	A	1632	C	1633	cWW		tSH
121	HL_4LFB_003	4LFB	0.2618	0	GNRA	A	SSU rRNA	G	158	G	159	A	160	A	161	A	162	C	163	cWW		tSH
122	HL_5J7L_003	5J7L	0.2378	0	GNRA	AA	SSU rRNA	G	158	G	159	A	160	A	161	A	162	C	163	cWW		tSH
123	HL_5TBW_019	5TBW	0.2331	0	GNRA	1	LSU rRNA	G	844	G	845	A	846	A	847	A	848	C	849	cWW		tSH
124	HL_1L9A_002	1L9A	0.2316	0	GNRA	B	signal recognition particle RNA S domain	G	197	G	198	A	199	A	200	A	201	C	202	cWW		tSH
125	HL_4OQU_003	4OQU	0.2169	0	GNRA	A	SAM-I/IV riboswitch	G	57	G	58	A	59	G	60	A	61	C	62	cWW		tSH
126	HL_5FJC_002	5FJC	0.1937	0	GNRA	A	SAM-I riboswitch	A	49	G	50	A	51	A	52	A	53	U	54	cWW		tSH
127	HL_5FJC_003	5FJC	0.2041	0	GNRA	A	SAM-I riboswitch	G	73	G	74	A	75	A	76	A	77	C	78	cWW		tSH
128	HL_4AOB_003	4AOB	0.1901	0	GNRA	A	SAM-I riboswitch	G	73	G	74	A	75	A	76	A	77	C	78	cWW		tSH
129	HL_4AOB_006	4AOB	0.1901	0	GNRA	A	SAM-I riboswitch	G	73\|\|\|\|7_555	G	74\|\|\|\|7_555	A	75\|\|\|\|7_555	A	76\|\|\|\|7_555	A	77\|\|\|\|7_555	C	78\|\|\|\|7_555	cWW		tSH
130	HL_2R8S_001	2R8S	0.2272	0	GNRA	R	P4-P6 RNA RIBOZYME DOMAIN	G	149	G	150	A	151	A	152	A	153	C	154	cWW		tSH
131	HL_3IGI_006	3IGI	0.2151	0	GNRA	A	Group IIC intron	G	274	G	275	A	276	A	277	A	278	C	279	cWW		tSH
132	HL_6DVK_001	6DVK	0.2140	0	GNRA	H	RNA (95-MER)	G	45	G	46	A	47	A	48	A	49	C	50	cWW		tSH
133	HL_5DCV_002	5DCV	0.2769	0	GNRA	D	RNA (47-MER)	G	26	G	27	A	28	A	29	A	30	C	31	cWW		tSH
134	HL_5XTM_001	5XTM	0.2680	0	GNRA	B	RNA (47-MER)	G	24	G	25	A	26	A	27	A	28	C	29	cWW		tSH
135	HL_5XTM_002	5XTM	0.2757	0	GNRA	D	RNA (47-MER)	G	24	G	25	A	26	A	27	A	28	C	29	cWW		tSH
136	HL_3MOJ_001	3MOJ	0.2431	0	GNRA	A	LSU rRNA	G	2529	G	2530	A	2531	A	2532	A	2533	C	2534	cWW		tSH
137	HL_3RW6_001	3RW6	0.2698	0	GNRA	H	constitutive transport element(CTE)of Mason-Pfizer monkey virus RNA	G	27	G	28	A	29	A	30	A	31	C	32	cWW		tSH
138	HL_5DDO_001	5DDO	0.2156	0	GNRA	A	L-glutamine riboswitch (58-MER)	G	11	G	12	A	13	A	14	A	15	C	16	cWW		ntSH
139	HL_1U6B_001	1U6B	0.2304	0	GNRA	B	197-MER	G	23	G	24	A	25	A	26	A	27	C	28	cWW		tSH
140	HL_3V7E_003	3V7E	0.2273	0	GNRA	C	SAM-I riboswitch	G	105	G	106	A	107	A	108	A	109	C	110	cWW		tSH
141	HL_1NBS_007	1NBS	0.2559	0	GNRA	B	RNase P class B	A	204	G	205	A	206	A	207	A	208	U	209	cWW	ntSH	tSH
142	HL_4ZT0_004	4ZT0	0.2309	0	GNRA	D	single-guide RNA	A	32	G	33	A	34	A	35	A	36	U	37	cWW		tSH
143	HL_4AOB_005	4AOB	0.2093	0	GNRA	A	SAM-I riboswitch	A	49\|\|\|\|7_555	A	50\|\|\|\|7_555	A	51\|\|\|\|7_555	A	52\|\|\|\|7_555	A	53\|\|\|\|7_555	U	54\|\|\|\|7_555	cWW		tSH
144	HL_4AOB_002	4AOB	0.2093	0	GNRA	A	SAM-I riboswitch	A	49	A	50	A	51	A	52	A	53	U	54	cWW		tSH
145	HL_1MFQ_002	1MFQ	0.2654	0	GNRA	A	SRP RNA	G	197	G	198	A	199	A	200	A	201	C	202	cWW		tSH
146	HL_4V9F_070	4V9F	0.2646	0	GNRA	0	LSU rRNA	G	2876	G	2877	U	2878	A	2879	A	2880	C	2881	cWW		tSH
147	HL_3E5C_001	3E5C	0.2512	0	GNRA	A	SMK box (SAM-III) Riboswitch	G	18	G	19	A	20	A	21	A	22	C	23	cWW		tSH
148	HL_5DDP_001	5DDP	0.2140	0	GNRA	A	glnA	G	11	G	12	A	13	A	14	A	15	C	16	cWW		tSH
149	HL_4V9F_020	4V9F	0.2375	0	GNRA	0	LSU rRNA	G	690	G	691	A	692	A	693	A	694	C	695	cWW		tSH
150	HL_5FQ5_003	5FQ5	0.2709	0	GNRA	A	SGRNA	U	72	G	73	A	74	A	75	A	76	A	77	cWW		tSH
151	HL_4V9F_028	4V9F	0.2258	1	GNRA	0	LSU rRNA	G	1054	G	1055	U	1056	A	1057	A	1058	C	1060	cWW		tSH
152	HL_5TBW_025	5TBW	0.3022	1	GNRA	1	LSU rRNA	G	1126	G	1127	U	1128	A	1129	A	1130	C	1132	cWW		tSH
153	HL_7A0S_026	7A0S	0.2765	2		X	LSU rRNA	A	966	G	967	C	968	A	970	A	971	U	973	cWW		tSH
154	HL_7RQB_027	7RQB	0.2484	2		1A	LSU rRNA	C	955	G	956	A	957	A	959	A	960	G	962	cWW		tSH
155	HL_4WF9_027	4WF9	0.2843	2	GNRA	X	LSU rRNA	U	999	G	1000	A	1001	A	1003	A	1004	G	1006	cWW		tSH
156	HL_4V9F_009	4V9F	0.2167	0	GNRA	0	LSU rRNA	C	252	U	253	C	254	A	255	C	256	G	257	cWW		ntSH
157	HL_5TBW_023	5TBW	0.2086	1	GNRA	1	LSU rRNA	C	1023	G	1024	A	1025	A	1026	A	1027	G	1029	cWW		ntSH
158	HL_6UFH_005	6UFH	0.1810	0	GNRA	A	RNA (167-MER)	C	145	G	146	A	147	A	148	A	149	G	150	cWW		tSH
159	HL_1KXK_001	1KXK	0.2158	0	GNRA	A	ai5g group II Self-splicing intron	U	33	G	34	A	35	A	36	A	37	G	38	cWW		tSH
160	HL_4K27_001	4K27	0.2223	0	GNRA	U	Myotonic Dystrophy Type 2 RNA	U	26	G	27	A	28	A	29	A	30	G	31	cWW		tSH
161	HL_4PCJ_001	4PCJ	0.2238	0	GNRA	A	trCUG-3('5)	U	16	G	17	A	18	A	19	A	20	G	21	cWW		tSH
162	HL_5BTM_001	5BTM	0.2315	0	GNRA	A	RNA (55-mer)	U	26	G	27	A	28	A	29	A	30	G	31	cWW		tSH
163	HL_6WPI_001	6WPI	0.2203	0		B	RNA (47-MER)	U	25	G	26	A	27	A	28	A	29	G	30	cWW		tSH
164	HL_5M0H_001	5M0H	0.2437	0	GNRA	A	ASH1 E3 (42 nt-TL/TLR)	U	21	G	22	A	23	A	24	A	25	G	26	cWW		tSH
165	HL_4K50_001	4K50	0.1848	0	GNRA	B	RNA (33-MER)	U	587	G	588	A	589	A	590	A	591	G	592	cWW		tSH
166	HL_2IL9_003	2IL9	0.1989	0	GNRA	A	Ribosomal Binding Domain of the IRES RNA	C	6119	G	6119\|\|\|A	A	6119\|\|\|B	A	6119\|\|\|C	A	6119\|\|\|D	G	6119\|\|\|E	ncWW		tSH
167	HL_1KH6_002	1KH6	0.1530	0	GNRA	A	JIIIabc	C	28	G	29	A	30	A	31	A	32	G	33	cWW		tSH
168	HL_4BW0_001	4BW0	0.2000	0	GNRA	A	HMKT-7	C	9	G	10	A	11	A	12	A	13	G	14	cWW		tSH
169	HL_6JQ5_004	6JQ5	0.1540	0	GNRA	B	RNA (82-MER)	C	45	G	46	A	47	A	48	A	49	G	50	cWW		tSH
170	HL_4FRG_002	4FRG	0.1664	0	GNRA	B	cobalamin riboswitch aptamer domain	C	46	G	47	A	48	A	49	A	50	G	51	cWW		tSH
171	HL_4LFB_027	4LFB	0.1307	0	GNRA	A	SSU rRNA	C	1165	G	1166	A	1167	A	1168	A	1169	G	1171	cWW		tSH
172	HL_5D5L_001	5D5L	0.1435	0	GNRA	A	PreQ1-II riboswitch	C	8	G	9	A	10	A	11	A	12	G	13	cWW		tSH
173	HL_4JF2_001	4JF2	0.1434	0	GNRA	A	PreQ1-II Riboswitch	C	8	G	9	A	10	A	11	A	12	G	13	cWW		tSH
174	HL_5VCI_001	5VCI	0.1493	0	GNRA	A	RNA (22-mer)	C	16	G	17	A	18	A	19	A	20	G	21	cWW		tSH
175	HL_5UZ6_001	5UZ6	0.1028	0	GNRA	A	RNA (25-MER)	C	15	G	16	A	17	A	18	A	19	G	20	cWW		tSH
176	HL_4PLX_001	4PLX	0.1221	0	GNRA	A	Core ENE hairpin and A-rich tract from MALAT1	C	24	G	25	A	26	A	27	A	28	G	29	cWW		tSH
177	HL_5Y7M_002	5Y7M	0.1257	0	GNRA	D	RNA (52-MER)	C	24	G	25	A	26	A	27	A	28	G	29	cWW		tSH
178	HL_5B2T_003	5B2T	0.1386	0	GNRA	A	Guide RNA	U	72	G	73	A	74	A	75	A	76	A	77	cWW		tSH
179	HL_5X2G_001	5X2G	0.1016	0	GNRA	B	sgRNA	U	32	G	33	A	34	A	35	A	36	A	37	cWW		tSH
180	HL_4Y1M_003	4Y1M	0.1361	0	GNRA	B	E. coli yybP-ykoY riboswitch	U	55	G	56	A	57	A	58	A	59	A	60	cWW		tSH
181	HL_2OIU_001	2OIU	0.1286	0	GNRA	P	L1 Ribozyme RNA Ligase	C	10	G	11	A	12	A	13	A	14	G	15	cWW		tSH
182	HL_1G1X_001	1G1X	0.1262	0	GNRA	D	16S RIBOSOMAL RNA	C	590	G	591	A	592	A	593	A	594	G	649	cWW		tSH
183	HL_5B2P_001	5B2P	0.1351	0	GNRA	B	Guide RNA	C	35	G	36	A	37	A	38	A	39	G	40	cWW		tSH
184	HL_4RUM_002	4RUM	0.1261	0	GNRA	A	NiCo riboswitch RNA	C	51	G	52	A	53	A	54	A	55	G	56	cWW		tSH
185	HL_3NDB_002	3NDB	0.1509	0	GNRA	M	SRP RNA	C	208	G	209	G	210	A	211	A	212	G	213	cWW		tSH
186	HL_5TBW_017	5TBW	0.1490	0	GNRA	1	LSU rRNA	C	732	G	733	C	734	A	735	A	736	G	737	cWW		tSH
187	HL_1MZP_001	1MZP	0.1653	0	GNRA	B	fragment of 23S rRNA	C	25	G	26	C	27	A	28	A	29	G	30	cWW		tSH
188	HL_7RQB_046	7RQB	0.1572	0		1A	LSU rRNA	C	1806	G	1807	U	1808	A	1809	A	1810	G	1811	cWW		tSH
189	HL_4WF9_060	4WF9	0.1904	0	GNRA	X	LSU rRNA	C	2685	G	2686	A	2687	G	2688	A	2689	G	2690	cWW		tSH
190	HL_3KTW_002	3KTW	0.2052	0	GNRA	C	SRP RNA	C	209	G	210	G	211	A	212	A	213	G	214	cWW		ntSH
191	HL_4V9F_066	4V9F	0.1685	0	GNRA	0	LSU rRNA	C	2695	G	2696	A	2697	G	2698	A	2699	G	2700	cWW		tSH
192	HL_5TBW_065	5TBW	0.1457	0	GNRA	1	LSU rRNA	C	3025	G	3026	A	3027	G	3028	A	3029	G	3030	cWW		tSH
193	HL_7RQB_064	7RQB	0.1673	0		1A	LSU rRNA	C	2658	G	2659	A	2660	G	2661	A	2662	G	2663	cWW		tSH
194	HL_7A0S_063	7A0S	0.1902	0		X	LSU rRNA	C	2637	G	2638	A	2639	G	2640	A	2641	G	2642	cWW		tSH
195	HL_5J7L_197	5J7L	0.1571	0	GNRA	DA	LSU rRNA	C	2658	G	2659	A	2660	G	2661	A	2662	G	2663	cWW		tSH
196	HL_7RQB_016	7RQB	0.2170	0		1A	LSU rRNA	C	487	G	488	G	489	G	491	A	492	G	493	cWW		tSH
197	HL_7A0S_016	7A0S	0.2521	0		X	LSU rRNA	C	498	G	499	G	500	G	501	A	502	G	503	cWW		tSH
198	HL_4WF9_016	4WF9	0.2164	0	GNRA	X	LSU rRNA	C	533	G	534	G	535	A	536	A	537	G	538	cWW		ntSH
199	HL_4W90_003	4W90	0.1651	0	GNRA	C	cyclic di-AMP riboswitch	C	82	G	83	A	84	A	85	A	86	G	87	cWW		tSH
200	HL_3CUL_001	3CUL	0.2284	0	GNRA	C	RNA (92-MER)	C	7	G	8	A	9	A	10	A	11	G	12	cWW		tSH
201	HL_3P22_001	3P22	0.2314	0	GNRA	A	Core ENE hairpin from KSHV PAN RNA	C	17	G	18	A	19	A	20	A	21	G	22	cWW		tSH
202	HL_5F9R_003	5F9R	0.1854	0	GNRA	A	RNA (116-MER)	U	90	G	91	A	92	A	93	A	94	A	95	cWW	ntSH	tSH
203	HL_6JDV_002	6JDV	0.1831	0	GNRA	B	sgRNA	U	86	G	87	A	88	A	89	A	90	A	91	cWW		tSH
204	HL_6CZR_091	6CZR	0.1732	0	GNRA	1a	SSU rRNA	C	875	G	876	C	877	A	878	A	879	G	880	cWW	ntSH	ntSH
205	HL_4V9F_048	4V9F	0.1999	0	GNRA	0	LSU rRNA	C	1862	G	1863	C	1864	A	1865	A	1866	G	1867	cWW		tSH
206	HL_5J7L_020	5J7L	0.1925	0	GNRA	AA	SSU rRNA	C	897	G	898	C	899	A	900	A	901	G	902	cWW		tSH
207	HL_4LFB_020	4LFB	0.1783	0	GNRA	A	SSU rRNA	C	897	G	898	C	899	A	900	A	901	G	902	cWW		tSH
208	HL_4V88_211	4V88	0.1622	0	GNRA	A6	SSU rRNA	C	1121	G	1122	C	1123	A	1124	A	1125	G	1126	cWW		tSH
209	HL_3NVI_002	3NVI	0.1442	0	GNRA	F	RNA (24-mer)	C	9	G	10	A	11	A	12	A	13	G	14	cWW		tSH
210	HL_3NMU_002	3NMU	0.1283	0	GNRA	E	RNA (34-MER)	C	18	G	19	A	20	A	21	A	22	G	23	cWW		tSH
211	HL_5J7L_004	5J7L	0.1453	0	GNRA	AA	SSU rRNA	C	186	G	187	C	188	A	189	A	190	G	191	cWW		ntSH
212	HL_3AM1_007	3AM1	0.1735	0	GNRA	B	ASL-truncated tRNA	C	45\|\|\|\|5_555	G	46\|\|\|\|5_555	A	47\|\|\|\|5_555	G	48\|\|\|\|5_555	A	49\|\|\|\|5_555	G	50\|\|\|\|5_555	cWW		tSH
213	HL_3AM1_003	3AM1	0.1735	0	GNRA	B	ASL-truncated tRNA	C	45	G	46	A	47	G	48	A	49	G	50	cWW		tSH
214	HL_4Y1M_002	4Y1M	0.1532	0	GNRA	B	E. coli yybP-ykoY riboswitch	C	24	G	25	A	26	A	27	A	28	G	29	cWW		tSH
215	HL_4V9F_054	4V9F	0.1512	0	GNRA	0	LSU rRNA	C	2248	G	2249	G	2250	G	2251	A	2252	G	2253	cWW		tSH
216	HL_1RLG_002	1RLG	0.1159	0	GNRA	D	25-MER	C	9	G	10	A	11	A	12	A	13	G	14	cWW		tSH
217	HL_6N2V_002	6N2V	0.1283	0	GNRA	A	X. oryzae Mn riboswitch optimized construct	C	56	G	57	A	58	A	59	A	60	G	61	cWW		tSH
218	HL_3LQX_001	3LQX	0.1732	0	GNRA	B	SRP RNA	C	153	G	154	A	155	A	156	A	157	G	158	cWW		tSH
219	HL_1Q96_001	1Q96	0.1620	0	GNRA	A	sarcin/ricin 28S rRNA	U	13	G	14	A	15	G	16	A	17	A	18	cWW		tSH
220	HL_6N2V_003	6N2V	0.1590	0	GNRA	A	X. oryzae Mn riboswitch optimized construct	C	76	G	77	A	78	A	79	A	80	G	81	cWW		tSH
221	HL_4NLF_001	4NLF	0.1383	0	GNRA	A	23S ribosomal RNA Sarcin Ricin Loop	C	2658	G	2659	A	2660	G	2661	A	2662	G	2663	cWW		tSH
222	HL_5M0J_001	5M0J	0.1901	0	GNRA	E	ASH1 E3 (28 nt-loop)	C	12	G	13	A	14	A	15	A	16	G	17	cWW		tSH
223	HL_5M0J_002	5M0J	0.1680	0	GNRA	F	ASH1 E3 (28 nt-loop)	C	12	G	13	A	14	A	15	A	16	G	17	cWW		tSH
224	HL_5M0I_002	5M0I	0.1397	0	GNRA	F	ASH1-E3 element, RNA (28-MER)	C	12	G	13	A	14	A	15	A	16	G	17	cWW		tSH
225	HL_5M0I_001	5M0I	0.1411	0	GNRA	E	ASH1-E3 element, RNA (28-MER)	C	12	G	13	A	14	A	15	A	16	G	17	cWW		tSH
226	HL_4V9F_072	4V9F	0.1624	0	GNRA	9	5S rRNA	C	89	G	90	C	91	G	92	A	93	G	94	cWW		tSH
227	HL_7RQB_058	7RQB	0.1416	0		1A	LSU rRNA	C	2374	G	2375	A	2376	A	2377	A	2378	G	2379	cWW		tSH
228	HL_4LFB_010	4LFB	0.1745	0	GNRA	A	SSU rRNA	C	379	G	380	C	381	A	382	A	383	G	384	cWW		ntSH
229	HL_5J7L_010	5J7L	0.1260	0	GNRA	AA	SSU rRNA	C	379	G	380	C	381	A	382	A	383	G	384	cWW		tSH
230	HL_5TPY_007	5TPY	0.1223	0	GNRA	A	RNA (71-MER)	C	13\|\|\|\|4_655	G	14\|\|\|\|4_655	A	15\|\|\|\|4_655	A	16\|\|\|\|4_655	A	17\|\|\|\|4_655	G	18\|\|\|\|4_655	cWW		tSH
231	HL_5TPY_010	5TPY	0.1223	0	GNRA	A	RNA (71-MER)	C	13\|\|\|\|8_555	G	14\|\|\|\|8_555	A	15\|\|\|\|8_555	A	16\|\|\|\|8_555	A	17\|\|\|\|8_555	G	18\|\|\|\|8_555	cWW		tSH
232	HL_5TPY_001	5TPY	0.1223	0	GNRA	A	RNA (71-MER)	C	13\|\|\|\|11_655	G	14\|\|\|\|11_655	A	15\|\|\|\|11_655	A	16\|\|\|\|11_655	A	17\|\|\|\|11_655	G	18\|\|\|\|11_655	cWW		tSH
233	HL_5TPY_004	5TPY	0.1223	0	GNRA	A	RNA (71-MER)	C	13	G	14	A	15	A	16	A	17	G	18	cWW		tSH
234	HL_4V9F_023	4V9F	0.0891	0	GNRA	0	LSU rRNA	C	804	G	805	A	806	A	807	A	808	G	809	cWW		tSH
235	HL_5TBW_011	5TBW	0.0000	0	GNRA	1	LSU rRNA	U	382	G	383	A	384	A	385	A	386	A	387	cWW		tSH
236	HL_4R4V_004	4R4V	0.1188	0	GNRA	A	VS ribozyme RNA	C	735	G	736	U	737	A	738	A	739	G	740	cWW		tSH
237	HL_4R4V_008	4R4V	0.1188	0	GNRA	A	VS ribozyme RNA	C	735\|\|\|\|7_556	G	736\|\|\|\|7_556	U	737\|\|\|\|7_556	A	738\|\|\|\|7_556	A	739\|\|\|\|7_556	G	740\|\|\|\|7_556	cWW		tSH
238	HL_5TPY_012	5TPY	0.1031	0	GNRA	A	RNA (71-MER)	C	62\|\|\|\|8_555	G	63\|\|\|\|8_555	A	64\|\|\|\|8_555	A	65\|\|\|\|8_555	A	66\|\|\|\|8_555	G	67\|\|\|\|8_555	cWW		tSH
239	HL_5TPY_006	5TPY	0.1031	0	GNRA	A	RNA (71-MER)	C	62	G	63	A	64	A	65	A	66	G	67	cWW		tSH
240	HL_5TPY_009	5TPY	0.1031	0	GNRA	A	RNA (71-MER)	C	62\|\|\|\|4_655	G	63\|\|\|\|4_655	A	64\|\|\|\|4_655	A	65\|\|\|\|4_655	A	66\|\|\|\|4_655	G	67\|\|\|\|4_655	cWW		tSH
241	HL_5TPY_003	5TPY	0.1031	0	GNRA	A	RNA (71-MER)	C	62\|\|\|\|11_655	G	63\|\|\|\|11_655	A	64\|\|\|\|11_655	A	65\|\|\|\|11_655	A	66\|\|\|\|11_655	G	67\|\|\|\|11_655	cWW		tSH
242	HL_3MXH_001	3MXH	0.1108	0	GNRA	R	c-di-GMP riboswitch	C	31	G	32	A	33	A	34	A	35	G	36	cWW		tSH
243	HL_5TBW_013	5TBW	0.1561	0	GNRA	1	LSU rRNA	C	599	G	600	U	601	A	602	A	603	G	604	cWW		tSH
244	HL_3IWN_001	3IWN	0.1250	0	GNRA	A	C-di-GMP riboswitch	C	21	G	22	A	23	A	24	A	25	G	26	cWW		ntSH
245	HL_4ENC_002	4ENC	0.1215	0	GNRA	A	Fluoride riboswitch	U	28	G	29	A	30	A	31	A	32	A	33	cWW		tSH
246	HL_3D0U_004	3D0U	0.2216	0	GNRA	A	Lysine Riboswitch RNA	C	142	G	143	A	144	A	145	A	146	G	147	cWW		tSH
247	HL_6JDV_001	6JDV	0.2442	0	GNRA	B	sgRNA	G	48	G	49	A	50	A	51	A	52	C	53	cWW		ntSH
248	HL_5TBW_047	5TBW	0.2320	1	GNRA	1	LSU rRNA	A	2164	G	2165	A	2166	A	2167	A	2168	U	2170	cWW		tSH
249	HL_3PDR_001	3PDR	0.1807	0	GNRA	X	M-box riboswitch (ykoK leader)	C	68	C	69	A	70	A	71	A	72	G	73	cWW		ntSH
250	HL_6CZR_090	6CZR	0.2790	0	GNRA	1a	SSU rRNA	C	840	U	841	A	842	A	843	C	844	G	845	cWW		ntSH
251	HL_5J7L_019	5J7L	0.2203	0	GNRA	AA	SSU rRNA	C	862	U	863	A	864	A	865	C	866	G	867	cWW	ntSH	ntSH
252	HL_4LFB_019	4LFB	0.2050	0	GNRA	A	SSU rRNA	C	862	U	863	A	864	A	865	C	866	G	867	cWW	ntSH	ntSH
253	HL_4P95_004	4P95	0.2051	0	GNRA	A	RNA (192-MER)	C	317	U	318	A	319	A	320	C	321	G	322	cWW		ntSH
254	HL_3RG5_011	3RG5	0.3073	0	GNRA	B	Selenocysteine transfer RNA	U	47\|\|\|C\|1_556	U	47\|\|\|D\|1_556	A	47\|\|\|E\|1_556	G	47\|\|\|F\|1_556	C	47\|\|\|G\|1_556	G	47\|\|\|H\|1_556	cWW		ntSH
255	HL_3RG5_007	3RG5	0.3073	0	GNRA	B	Selenocysteine transfer RNA	U	47\|\|\|C	U	47\|\|\|D	A	47\|\|\|E	G	47\|\|\|F	C	47\|\|\|G	G	47\|\|\|H	cWW		ntSH
256	HL_5J7L_007	5J7L	0.2803	0	GNRA	AA	SSU rRNA	U	296	G	297	A	298	G	299	A	300	G	301	cWW		tSH
257	HL_4LFB_007	4LFB	0.2871	0	GNRA	A	SSU rRNA	U	296	G	297	A	298	G	299	A	300	G	301	cWW		tSH
258	HL_6CZR_078	6CZR	0.2411	0	GNRA	1a	SSU rRNA	U	292	G	293	A	294	G	295	A	296	G	297	cWW		ntSH
259	HL_4LFB_022	4LFB	0.3334	0	GNRA	A	SSU rRNA	U	1012	G	1013	A	1014	A	1015	A	1016	G	1017	cWW		tSH
260	HL_6CZR_098	6CZR	0.2939	0	GNRA	1a	SSU rRNA	C	1148	G	1149	A	1150	A	1151	A	1152	G	1153	cWW		tSH
261	HL_4KQY_002	4KQY	0.4264	0	Other HL	A	SAM-I riboswitch	C	60	G	61	A	62	A	63	A	64	G	65	cWW		tSH
262	HL_4KQY_005	4KQY	0.4264	0	Other HL	A	SAM-I riboswitch	C	60\|\|\|\|4_555	G	61\|\|\|\|4_555	A	62\|\|\|\|4_555	A	63\|\|\|\|4_555	A	64\|\|\|\|4_555	G	65\|\|\|\|4_555	cWW		tSH
263	HL_7A0S_005	7A0S	0.3559	0		X	LSU rRNA	C	146	G	147	C	148	A	149	A	150	G	151	cWW		tSH
264	HL_4V9F_036	4V9F	0.4779	1	GNRA	0	LSU rRNA	G	1468	C	1469	A	1470	A	1471	C	1472	C	1474	cWW		ntWH
265	HL_3AM1_006	3AM1	0.4826	0	Other HL	B	ASL-truncated tRNA	C	32\|\|\|\|5_555	U	33\|\|\|\|5_555	U	34\|\|\|\|5_555	C	35\|\|\|\|5_555	G	36\|\|\|\|5_555	G	37\|\|\|\|5_555	cWW
266	HL_3AM1_002	3AM1	0.4826	0	Other HL	B	ASL-truncated tRNA	C	32	U	33	U	34	C	35	G	36	G	37	cWW
267	HL_4V88_200	4V88	0.6252	0	Other HL	A6	SSU rRNA	C	569	A	570	G	571	C	572	C	573	G	574	cWW
268	HL_4V88_218	4V88	0.5632	0	GNRA	A6	SSU rRNA	C	1501	G	1502	A	1503	G	1504	A	1505	G	1506	cWW		tSH
269	HL_6AZ4_001	6AZ4	0.5442	0	GNRA	A	RNA (32-MER)	U	20	G	21	A	22	A	23	A	24	G	25	cWW		tSH
270	HL_6CB3_004	6CB3	0.5614	0	GNRA	B	RNA (99-MER)	G	20	G	21	A	22	A	23	A	24	C	25	cWW		tSH
271	HL_1M5K_003	1M5K	0.6070	0	GNRA	B	RNA HAIRPIN RIBOZYME	G	74	G	75	A	76	A	77	A	78	C	79	cWW		tSH
272	HL_4QLM_001	4QLM	0.7586	0	GNRA	A	cyclic di-AMP riboswitch	C	54	G	55	A	56	A	57	A	58	G	59	cWW		tSH

3D structures

Complete motif including flanking bases

Sequence	Counts
CGAAAG	73
GGAAAC	37
CGCAAG	16
CGAGAG	15
CGUGAG	12
UGAAAG	11
UGAAAA	10
AGAAAU	9
CGUAAG	6
CGCGAG	6
CGAAGG	5
CGGAAG	4
GGUAAC	4
CUAACG	4
GGGAGC	3
GGCGAC	3
AGUGAU	3
GGUGAC	3
CGGGAG	3
UGAGAG	3
UGCAAG	2
UGUGAA	2
GGCAAC	2
GGAGAC	2
AAAAAU	2
GGUAAGC	2
UUAGCG	2
CUUCGG	2
ACCUUU	1
UUCAAG	1
CGACAG	1
CGAACG	1
GUGAAC	1
GAAGCU	1
CUGAAG	1
CAAACG	1
GUAAUUC	1
UGUGAG	1
UGACGG	1
CGUAGG	1
CGCAGG	1
CGGAACG	1
AGCGAU	1
AGCAAU	1
AGCUAACU	1
CGAUAACG	1
UGAUAAGG	1
CUCACG	1
CGAAAUG	1
UGAGAA	1
AGAAAGU	1
CCAAAG	1
GCAACUC	1
CAGCCG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GAAA	140
GCAA	21
GUGA	21
GAGA	21
GUAA	10
GCGA	10
GAAG	5
GGAA	4
UAAC	4
GGAG	3
GGGA	3
UGAA	2
AAAA	2
GUAAG	2
UAGC	2
UUCG	2
CCUU	1
UCAA	1
GACA	1
GAAC	1
AAGC	1
AAAC	1
UAAUU	1
GACG	1
GUAG	1
GCAG	1
GGAAC	1
GCUAAC	1
GAUAAC	1
GAUAAG	1
UCAC	1
GAAAU	1
GAAAG	1
CAAA	1
CAACU	1
AGCC	1

Release history

Release	3.60	3.61
Date	2022-07-20	2022-08-17
Status	Updated, 1 parent	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: GNRA (203)
Other HL (38)
GNRA with GA tSW pair (4)
Basepair signature: cWW-tSH-R-R
Heat map statistics: Min 0.04 | Avg 0.36 | Max 0.99

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Coloring options: Nucleotide numbers

Motif HL_43074.16 Version HL_43074.16 of this group appears in releases 3.60 to 3.61 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif HL_43074.16 Version HL_43074.16 of this group appears in releases 3.60 to 3.61

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Csv

Json