HL_3B31_001
3D structure
- PDB id
- 3B31 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of domain III of the Cricket Paralysis Virus IRES RNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- AUUAGGUAGU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_92697.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
3B31|1|A|A|6184
3B31|1|A|U|6185
3B31|1|A|U|6186
3B31|1|A|A|6187
3B31|1|A|G|6188
3B31|1|A|G|6189
3B31|1|A|U|6190
3B31|1|A|A|6191
3B31|1|A|G|6192
3B31|1|A|U|6193
Current chains
- Chain A
- RNA (29-MER)
Nearby chains
- Chain B
- RNA (5'-R(P*UP*AP*AP*GP*AP*AP*AP*UP*UP*UP*AP*CP*CP*U)-3')
Coloring options: