HL_3BBX_001

3D structure

PDB id

3BBX (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

10 Å

Loop

Sequence

CAUGCCG

Length

7 nucleotides

Bulged bases

3BBX|1|A|G|41

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3BBX_001 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1458

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

3BBX|1|A|C|38
3BBX|1|A|A|39
3BBX|1|A|U|40
3BBX|1|A|G|41
3BBX|1|A|C|42
3BBX|1|A|C|43
3BBX|1|A|G|44

Current chains

Chain A

5S ribosomal RNA

Nearby chains

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain F

50S ribosomal protein L5

Chain O

50S ribosomal protein L18