3BBX Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_3BBX_071 | No text annotation | ||
| HL_3BBX_001 | No text annotation | ||
| HL_3BBX_002 | Mini UNCG | ||
| HL_3BBX_003 | No text annotation | ||
| HL_3BBX_004 | No text annotation | ||
| HL_3BBX_005 | No text annotation | ||
| HL_3BBX_006 | No text annotation | ||
| HL_3BBX_007 | No text annotation | ||
| HL_3BBX_008 | No text annotation | ||
| HL_3BBX_009 | No text annotation | ||
| HL_3BBX_010 | No text annotation | ||
| HL_3BBX_011 | T-loop with 2 stacked bulged bases | ||
| HL_3BBX_012 | No text annotation | ||
| HL_3BBX_013 | T-loop with unstacked turn | ||
| HL_3BBX_014 | No text annotation | ||
| HL_3BBX_015 | Pseudoknot geometry | ||
| HL_3BBX_016 | GNRA | ||
| HL_3BBX_017 | GNRA | ||
| HL_3BBX_018 | No text annotation | ||
| HL_3BBX_019 | No text annotation | ||
| HL_3BBX_020 | GNRA | ||
| HL_3BBX_021 | GNRA | ||
| HL_3BBX_022 | GNRA wlth tandem sheared | ||
| HL_3BBX_023 | No text annotation | ||
| HL_3BBX_024 | UNCG variation | ||
| HL_3BBX_025 | No text annotation | ||
| HL_3BBX_026 | Externally structured | ||
| HL_3BBX_027 | GNRA | ||
| HL_3BBX_028 | No text annotation | ||
| HL_3BBX_029 | No text annotation | ||
| HL_3BBX_030 | GNRA wlth tandem sheared | ||
| HL_3BBX_031 | No text annotation | ||
| HL_3BBX_032 | GNRA | ||
| HL_3BBX_033 | T-loop with 2 stacked bulged bases | ||
| HL_3BBX_034 | Pseudoknot geometry with 3' bulge | ||
| HL_3BBX_035 | GNRA | ||
| HL_3BBX_036 | No text annotation | ||
| HL_3BBX_037 | No text annotation | ||
| HL_3BBX_038 | Pseudoknot geometry with 3' bulge | ||
| HL_3BBX_039 | UNCG | ||
| HL_3BBX_040 | No text annotation | ||
| HL_3BBX_041 | No text annotation | ||
| HL_3BBX_042 | GNRA | ||
| HL_3BBX_043 | UNCG | ||
| HL_3BBX_044 | No text annotation | ||
| HL_3BBX_045 | No text annotation | ||
| HL_3BBX_046 | No text annotation | ||
| HL_3BBX_047 | GNRA related | ||
| HL_3BBX_048 | GNRA variation | ||
| HL_3BBX_049 | No text annotation | ||
| HL_3BBX_050 | No text annotation | ||
| HL_3BBX_051 | No text annotation | ||
| HL_3BBX_052 | No text annotation | ||
| HL_3BBX_053 | No text annotation | ||
| HL_3BBX_054 | No text annotation | ||
| HL_3BBX_055 | No text annotation | ||
| HL_3BBX_056 | No text annotation | ||
| HL_3BBX_072 | No text annotation | ||
| HL_3BBX_057 | Pseudoknot geometry | ||
| HL_3BBX_058 | GNRA | ||
| HL_3BBX_059 | GNRA | ||
| HL_3BBX_060 | No text annotation | ||
| HL_3BBX_061 | No text annotation | ||
| HL_3BBX_062 | GNRA variation | ||
| HL_3BBX_063 | No text annotation | ||
| HL_3BBX_064 | GNRA | ||
| HL_3BBX_065 | GNRA | ||
| HL_3BBX_066 | Ribsomal LSU H95 | ||
| HL_3BBX_067 | No text annotation | ||
| HL_3BBX_068 | Externally structured | ||
| HL_3BBX_069 | No text annotation | ||
| HL_3BBX_070 | GNRA |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3BBX_001 | Major groove intercalation | ||
| IL_3BBX_002 | No text annotation | ||
| IL_3BBX_003 | Minor groove platform | ||
| IL_3BBX_004 | Symmetric double minor groove platform | ||
| IL_3BBX_005 | Bacterial 5S Loop E | ||
| IL_3BBX_006 | Triple sheared with non-canonical cWW | ||
| IL_3BBX_007 | Single bulged A | ||
| IL_3BBX_008 | Minor groove platform | ||
| IL_3BBX_009 | No text annotation | ||
| IL_3BBX_010 | Single stack bend | ||
| IL_3BBX_011 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_3BBX_012 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_3BBX_013 | No text annotation | ||
| IL_3BBX_014 | No text annotation | ||
| IL_3BBX_015 | No text annotation | ||
| IL_3BBX_016 | No text annotation | ||
| IL_3BBX_017 | Double sheared | ||
| IL_3BBX_018 | AAA cross-strand stack | ||
| IL_3BBX_019 | Isolated non-canonical cWW pair | ||
| IL_3BBX_020 | tHW-tHW cross-strand stack | ||
| IL_3BBX_021 | Single bulged A | ||
| IL_3BBX_022 | Single bulged G | ||
| IL_3BBX_023 | Triple sheared | ||
| IL_3BBX_024 | Major groove platform | ||
| IL_3BBX_025 | Multiple bulged bases | ||
| IL_3BBX_026 | Single stack bend | ||
| IL_3BBX_027 | No text annotation | ||
| IL_3BBX_028 | Single stack bend | ||
| IL_3BBX_029 | Isolated non-canonical cWW pair | ||
| IL_3BBX_030 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_3BBX_031 | Single bulged G | ||
| IL_3BBX_032 | No text annotation | ||
| IL_3BBX_033 | Isolated non-canonical cWW pair | ||
| IL_3BBX_034 | Single bulged C | ||
| IL_3BBX_035 | UAA/GAN | ||
| IL_3BBX_036 | SSU/LSU pseudoknot | ||
| IL_3BBX_037 | Single bulged U | ||
| IL_3BBX_038 | Kink-turn related | ||
| IL_3BBX_106 | No text annotation | ||
| IL_3BBX_039 | Isolated non-canonical cWW pair | ||
| IL_3BBX_040 | Tandem non-canonical cWW pairs | ||
| IL_3BBX_041 | Kink-turn | ||
| IL_3BBX_042 | No text annotation | ||
| IL_3BBX_043 | Major groove platform | ||
| IL_3BBX_044 | Isolated cWS basepair | ||
| IL_3BBX_045 | No text annotation | ||
| IL_3BBX_046 | Kink-turn | ||
| IL_3BBX_047 | C-loop | ||
| IL_3BBX_048 | UAA/GAN | ||
| IL_3BBX_049 | tSH-tHW-tHS | ||
| IL_3BBX_050 | No text annotation | ||
| IL_3BBX_051 | UAA/GAN | ||
| IL_3BBX_052 | Tandem non-canonical cWW pairs | ||
| IL_3BBX_053 | No text annotation | ||
| IL_3BBX_054 | No text annotation | ||
| IL_3BBX_055 | tSH-tHW-tHS | ||
| IL_3BBX_056 | No text annotation | ||
| IL_3BBX_057 | Single bulged A | ||
| IL_3BBX_058 | UAA/GAN variation | ||
| IL_3BBX_059 | No text annotation | ||
| IL_3BBX_060 | Isolated tWW turn | ||
| IL_3BBX_061 | Major groove platform; stack outside cWW | ||
| IL_3BBX_107 | No text annotation | ||
| IL_3BBX_062 | Intercalated tWH | ||
| IL_3BBX_063 | tSH-tSH-tHH-tHS | ||
| IL_3BBX_064 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_3BBX_065 | Triple sheared | ||
| IL_3BBX_066 | Single bulged C | ||
| IL_3BBX_067 | Single bulged A | ||
| IL_3BBX_068 | Kink-turn related | ||
| IL_3BBX_069 | Minor groove platform, major groove intercalation | ||
| IL_3BBX_070 | Major groove intercalation | ||
| IL_3BBX_071 | Minor groove platform | ||
| IL_3BBX_108 | No text annotation | ||
| IL_3BBX_072 | UAA/GAN related | ||
| IL_3BBX_073 | Bulged stacked bases | ||
| IL_3BBX_074 | No text annotation | ||
| IL_3BBX_075 | Major groove platform | ||
| IL_3BBX_076 | No text annotation | ||
| IL_3BBX_077 | Single bulged U | ||
| IL_3BBX_078 | Minor groove platform | ||
| IL_3BBX_079 | Isolated tHS basepair with bulges | ||
| IL_3BBX_080 | Isolated non-canonical cWW pair | ||
| IL_3BBX_081 | Stack and bulge | ||
| IL_3BBX_082 | Isolated non-canonical cWW pair | ||
| IL_3BBX_109 | No text annotation | ||
| IL_3BBX_083 | Single bulged U | ||
| IL_3BBX_084 | Double sheared | ||
| IL_3BBX_085 | No text annotation | ||
| IL_3BBX_086 | Single stack bend | ||
| IL_3BBX_087 | Major groove platform | ||
| IL_3BBX_088 | Major groove platform | ||
| IL_3BBX_089 | Major groove minor groove platform with extra cWW | ||
| IL_3BBX_090 | Double sheared with non-canonical cWW | ||
| IL_3BBX_091 | Major groove platform | ||
| IL_3BBX_092 | Isolated non-canonical cWW with bulges | ||
| IL_3BBX_093 | No text annotation | ||
| IL_3BBX_094 | Major groove platform with intercalation | ||
| IL_3BBX_095 | Single bulged A | ||
| IL_3BBX_096 | tSH-tHS-tHW | ||
| IL_3BBX_097 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_3BBX_098 | C-loop | ||
| IL_3BBX_099 | UAA/GAN related, with intercalation | ||
| IL_3BBX_100 | Multiple bulged bases | ||
| IL_3BBX_101 | UAA/GAN with extra cWW | ||
| IL_3BBX_102 | No text annotation | ||
| IL_3BBX_103 | Major groove intercalation | ||
| IL_3BBX_104 | Multiple bulged bases with non-canonical cWW | ||
| IL_3BBX_105 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_3BBX_001 | No text annotation | ||
| J3_3BBX_011 | No text annotation | ||
| J3_3BBX_014 | No text annotation | ||
| J3_3BBX_015 | No text annotation | ||
| J3_3BBX_012 | No text annotation | ||
| J3_3BBX_002 | No text annotation | ||
| J3_3BBX_003 | No text annotation | ||
| J3_3BBX_004 | No text annotation | ||
| J3_3BBX_005 | No text annotation | ||
| J3_3BBX_006 | No text annotation | ||
| J3_3BBX_016 | No text annotation | ||
| J3_3BBX_017 | No text annotation | ||
| J3_3BBX_007 | No text annotation | ||
| J3_3BBX_008 | No text annotation | ||
| J3_3BBX_009 | No text annotation | ||
| J3_3BBX_010 | No text annotation | ||
| J4_3BBX_001 | No text annotation | ||
| J4_3BBX_002 | No text annotation | ||
| J4_3BBX_003 | No text annotation | ||
| J4_3BBX_004 | No text annotation | ||
| J4_3BBX_005 | No text annotation | ||
| J4_3BBX_006 | No text annotation | ||
| J4_3BBX_007 | No text annotation | ||
| J4_3BBX_008 | No text annotation | ||
| J4_3BBX_009 | No text annotation | ||
| J5_3BBX_001 | No text annotation | ||
| J5_3BBX_002 | No text annotation | ||
| J5_3BBX_003 | No text annotation | ||
| J5_3BBX_004 | No text annotation | ||
| J6_3BBX_001 | No text annotation | ||
| J6_3BBX_002 | No text annotation | ||
| J7_3BBX_001 | No text annotation |
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