HL_3BBX_011

3D structure

PDB id

3BBX (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

10 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

3BBX|1|B|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3BBX_011 not in the Motif Atlas

Homologous match to HL_5J7L_142

Geometric discrepancy: 0.1149

The information below is about HL_5J7L_142

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

3BBX|1|B|C|305
3BBX|1|B|U|306
3BBX|1|B|G|307
3BBX|1|B|G|308
3BBX|1|B|A|309
3BBX|1|B|A|310
3BBX|1|B|A|311
3BBX|1|B|G|312

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain U

50S ribosomal protein L24