3D structure

PDB id
3BBX (explore in PDB, NAKB, or RNA 3D Hub)
Description
The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex
Experimental method
ELECTRON MICROSCOPY
Resolution
10 Å

Loop

Sequence
GUGACAGCC
Length
9 nucleotides
Bulged bases
3BBX|1|B|G|329, 3BBX|1|B|A|330, 3BBX|1|B|C|331
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_3BBX_013 not in the Motif Atlas
Homologous match to HL_7RQB_012
Geometric discrepancy: 0.101
The information below is about HL_7RQB_012
Detailed Annotation
T-loop with unstacked turn
Broad Annotation
T-loop
Motif group
HL_08002.9
Basepair signature
cWW-tWH-F-F
Number of instances in this motif group
19

Unit IDs

3BBX|1|B|G|327
3BBX|1|B|U|328
3BBX|1|B|G|329
3BBX|1|B|A|330
3BBX|1|B|C|331
3BBX|1|B|A|332
3BBX|1|B|G|333
3BBX|1|B|C|334
3BBX|1|B|C|335

Current chains

Chain B
23S ribosomal RNA

Nearby chains

Chain E
50S ribosomal protein L4
Chain U
50S ribosomal protein L24

Coloring options:


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