HL_3BBX_015

3D structure

PDB id

3BBX (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

10 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

3BBX|1|B|G|411

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3BBX_015 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.0732

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

3BBX|1|B|G|410
3BBX|1|B|G|411
3BBX|1|B|A|412
3BBX|1|B|C|413
3BBX|1|B|C|414
3BBX|1|B|A|415
3BBX|1|B|U|416
3BBX|1|B|C|417

Current chains

Chain B

23S ribosomal RNA

Nearby chains