HL_3BBX_028

3D structure

PDB id

3BBX (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

10 Å

Loop

Sequence

GAAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3BBX_028 not in the Motif Atlas

Homologous match to HL_7A0S_027

Geometric discrepancy: 0.3646

The information below is about HL_7A0S_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42998.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

3BBX|1|B|G|978
3BBX|1|B|A|979
3BBX|1|B|A|980
3BBX|1|B|A|981
3BBX|1|B|C|982
3BBX|1|B|A|983
3BBX|1|B|A|984
3BBX|1|B|C|985

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain Q

50S ribosomal protein L20