HL_3BBX_038

3D structure

PDB id

3BBX (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

10 Å

Loop

Sequence

GCAAAUC

Length

7 nucleotides

Bulged bases

3BBX|1|B|C|1493, 3BBX|1|B|U|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3BBX_038 not in the Motif Atlas

Homologous match to HL_5J7L_170

Geometric discrepancy: 0.1235

The information below is about HL_5J7L_170

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

3BBX|1|B|G|1492
3BBX|1|B|C|1493
3BBX|1|B|A|1494
3BBX|1|B|A|1495
3BBX|1|B|A|1496
3BBX|1|B|U|1497
3BBX|1|B|C|1498

Current chains

Chain B

23S ribosomal RNA

Nearby chains