HL_3BBX_054

3D structure

PDB id

3BBX (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

10 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

3BBX|1|B|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3BBX_054 not in the Motif Atlas

Homologous match to HL_5J7L_186

Geometric discrepancy: 0.0732

The information below is about HL_5J7L_186

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

3BBX|1|B|C|2248
3BBX|1|B|U|2249
3BBX|1|B|G|2250
3BBX|1|B|G|2251
3BBX|1|B|G|2252
3BBX|1|B|G|2253
3BBX|1|B|C|2254
3BBX|1|B|G|2255
3BBX|1|B|G|2256

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain W

50S ribosomal protein L27