HL_3BBX_056

3D structure

PDB id

3BBX (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

10 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

3BBX|1|B|G|2307

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3BBX_056 not in the Motif Atlas

Homologous match to HL_4WF9_051

Geometric discrepancy: 0.5266

The information below is about HL_4WF9_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3BBX|1|B|G|2303
3BBX|1|B|G|2304
3BBX|1|B|U|2305
3BBX|1|B|C|2306
3BBX|1|B|G|2307
3BBX|1|B|G|2308
3BBX|1|B|A|2309
3BBX|1|B|C|2310
3BBX|1|B|A|2311
3BBX|1|B|U|2312
3BBX|1|B|C|2313

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L5