HL_3BBX_069

3D structure

PDB id

3BBX (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

10 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

3BBX|1|B|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3BBX_069 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.0679

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

3BBX|1|B|G|2819
3BBX|1|B|A|2820
3BBX|1|B|A|2821
3BBX|1|B|G|2822
3BBX|1|B|A|2823
3BBX|1|B|C|2824
3BBX|1|B|G|2825
3BBX|1|B|A|2826
3BBX|1|B|C|2827

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain N

50S ribosomal protein L17