HL_3BO3_004

3D structure

PDB id

3BO3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

A relaxed active site following exon ligation by a group I intron

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CAAACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3BO3_004 not in the Motif Atlas

Geometric match to HL_1U6B_004

Geometric discrepancy: 0.0826

The information below is about HL_1U6B_004

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

3BO3|1|B|C|153
3BO3|1|B|A|154
3BO3|1|B|A|155
3BO3|1|B|A|156
3BO3|1|B|C|157
3BO3|1|B|G|158

Current chains

Chain B

Group I intron P9

Nearby chains