3BO3 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_3BO3_001 | 1/B/23:28 | GNRA | geometric HL_1U6B_001 HL_34789.5 | |
| HL_3BO3_002 | 1/B/70:75 | Pseudoknot geometry | geometric HL_1U6B_002 HL_12125.3 | |
| HL_3BO3_004 | 1/B/153:158 | GNRA variation | geometric HL_1U6B_004 HL_34789.5 | |
| HL_3BO3_003 | 1/B/1002:1013 | U1 small nuclear ribonucleoprotein A binding hairpin | geometric HL_1U6B_003 HL_36992.2 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_3BO3_001 | 1/B/19:22, 1/B/29:31 | Isolated non-canonical cWW pair | geometric IL_1U6B_001 IL_42997.6 | |
| IL_3BO3_003 | 1/B/56:60, 1/B/84:88 | Double sheared with non-canonical cWW | geometric IL_1U6B_002 IL_87767.3 | |
| IL_3BO3_004 | 1/B/61:65, 1/B/80:83 | Receptor of 11-nt loop-receptor motif | geometric IL_1U6B_003 IL_95104.1 | |
| IL_3BO3_012 | 1/B/96:100, 1/B/119:122 | No text annotation | geometric IL_1U6B_004 IL_20358.1 | |
| IL_3BO3_013 | 1/B/100:102, 1/B/117:119 | Isolated non-canonical cWW pair | geometric IL_1U6B_005 IL_71625.4 | |
| IL_3BO3_006 | 1/B/128:130, 1/B/177:178 | Minor groove platform | geometric IL_6DTD_003 IL_34520.4 | |
| IL_3BO3_007 | 1/B/134:144, 1/B/166:173 | Pseudoknot | geometric IL_1U6B_008 IL_43467.1 | |
| IL_3BO3_008 | 1/B/147:151, 1/B/160:163 | Receptor of 11-nt loop-receptor motif | geometric IL_3IGI_012 IL_95104.1 | |
| IL_3BO3_009 | 1/B/181:184, 1/C/197:203 | Reverse kink-turn | geometric IL_1U6B_011 IL_09908.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3BO3_002 | Isolated cWS basepair | ||
| IL_3BO3_011 | No text annotation | ||
| IL_3BO3_005 | No text annotation | ||
| IL_3BO3_010 | Tandem non-canonical cWW pairs |
Valid loops
No loops found
Problematic loops
No problematic loops
Coloring options: