HL_3BO4_003

3D structure

PDB id

3BO4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

A relaxed active site following exon ligation by a group I intron

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

CAUUGCACUCCG

Length

12 nucleotides

Bulged bases

3BO4|1|B|C|1007

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3BO4_003 not in the Motif Atlas

Geometric match to HL_7A0S_011

Geometric discrepancy: 0.1405

The information below is about HL_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

3BO4|1|B|C|1002
3BO4|1|B|A|1003
3BO4|1|B|U|1004
3BO4|1|B|U|1005
3BO4|1|B|G|1006
3BO4|1|B|C|1007
3BO4|1|B|A|1008
3BO4|1|B|C|1009
3BO4|1|B|U|1010
3BO4|1|B|C|1011
3BO4|1|B|C|1012
3BO4|1|B|G|1013

Current chains

Chain B

Group I intron P9

Nearby chains

Chain A

U1 small nuclear ribonucleoprotein A