3BO4 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_3BO4_001 | 1/B/23:28 | GNRA | geometric HL_4AOB_003 HL_34789.5 | |
| HL_3BO4_002 | 1/B/70:75 | Pseudoknot geometry | geometric HL_1U6B_002 HL_12125.3 | |
| HL_3BO4_004 | 1/B/153:158 | GNRA variation | geometric HL_1U6B_004 HL_34789.5 | |
| HL_3BO4_003 | 1/B/1002:1013 | No text annotation | geometric HL_7A0S_011 HL_75660.9 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_3BO4_002 | 1/B/19:22, 1/B/29:31 | No text annotation | ||
| IL_3BO4_003 | 1/B/56:60, 1/B/84:88 | Double sheared with non-canonical cWW | geometric IL_1U6B_002 IL_87767.3 | |
| IL_3BO4_004 | 1/B/61:65, 1/B/80:83 | Receptor of 11-nt loop-receptor motif | geometric IL_1U6B_003 IL_95104.1 | |
| IL_3BO4_005 | 1/B/96:100, 1/B/119:122 | No text annotation | geometric IL_1U6B_004 IL_20358.1 | |
| IL_3BO4_006 | 1/B/100:102, 1/B/117:119 | Isolated non-canonical cWW pair | geometric IL_1U6B_005 IL_71625.4 | |
| IL_3BO4_009 | 1/B/128:130, 1/B/177:178 | Minor groove platform | geometric IL_2QWY_009 IL_34520.4 | |
| IL_3BO4_010 | 1/B/134:144, 1/B/166:173 | Pseudoknot | geometric IL_1U6B_008 IL_43467.1 | |
| IL_3BO4_011 | 1/B/147:151, 1/B/160:163 | Receptor of 11-nt loop-receptor motif | geometric IL_5Y7M_005 IL_87739.1 | |
| IL_3BO4_012 | 1/B/181:184, 1/C/197:203 | Reverse kink-turn | geometric IL_1U6B_011 IL_09908.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3BO4_001 | Stack and bulge | ||
| IL_3BO4_007 | Isolated non-canonical cWW pair | ||
| IL_3BO4_008 | Isolated non-canonical cWW pair |
Valid loops
No loops found
Problematic loops
No problematic loops
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