HL_3BO4_004

3D structure

PDB id

3BO4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

A relaxed active site following exon ligation by a group I intron

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

CAAACG

Length

6 nucleotides

Bulged bases

3BO4|1|B|C|157

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3BO4_004 not in the Motif Atlas

Geometric match to HL_1U6B_004

Geometric discrepancy: 0.1105

The information below is about HL_1U6B_004

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

3BO4|1|B|C|153
3BO4|1|B|A|154
3BO4|1|B|A|155
3BO4|1|B|A|156
3BO4|1|B|C|157
3BO4|1|B|G|158

Current chains

Chain B

Group I intron P9

Nearby chains