HL_3CC2_031

3D structure

PDB id

3CC2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with rrnA Sequence for the 23S rRNA and Genome-derived Sequences for r-Proteins

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGUAACAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CC2_031 not in the Motif Atlas

Homologous match to HL_5D8H_002

Geometric discrepancy: 0.1306

The information below is about HL_5D8H_002

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

3CC2|1|0|C|1196
3CC2|1|0|G|1197
3CC2|1|0|U|1198
3CC2|1|0|A|1199
3CC2|1|0|A|1200
3CC2|1|0|C|1201
3CC2|1|0|A|1202
3CC2|1|0|G|1203

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains