HL_3CC2_039

3D structure

PDB id

3CC2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with rrnA Sequence for the 23S rRNA and Genome-derived Sequences for r-Proteins

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGUAAUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CC2_039 not in the Motif Atlas

Homologous match to HL_4V9F_039

Geometric discrepancy: 0.0248

The information below is about HL_4V9F_039

Detailed Annotation

Other HL

Broad Annotation

Other HL

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

3CC2|1|0|C|1594
3CC2|1|0|G|1595
3CC2|1|0|U|1596
3CC2|1|0|A|1597
3CC2|1|0|A|1598
3CC2|1|0|U|1599
3CC2|1|0|G|1600

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain P

50S ribosomal protein L19e

Chain Z

50S ribosomal protein L37Ae