HL_3CC2_055

3D structure

PDB id

3CC2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with rrnA Sequence for the 23S rRNA and Genome-derived Sequences for r-Proteins

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

3CC2|1|0|G|2283

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CC2_055 not in the Motif Atlas

Homologous match to HL_4V9F_055

Geometric discrepancy: 0.0236

The information below is about HL_4V9F_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

3CC2|1|0|C|2281
3CC2|1|0|U|2282
3CC2|1|0|G|2283
3CC2|1|0|G|2284
3CC2|1|0|G|2285
3CC2|1|0|G|2286
3CC2|1|0|C|2287
3CC2|1|0|G|2288
3CC2|1|0|G|2289

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain H

50S ribosomal protein L10e