HL_3CC2_063

3D structure

PDB id

3CC2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with rrnA Sequence for the 23S rRNA and Genome-derived Sequences for r-Proteins

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UGCAGAAG

Length

8 nucleotides

Bulged bases

3CC2|1|0|G|2564

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CC2_063 not in the Motif Atlas

Homologous match to HL_4V9F_063

Geometric discrepancy: 0.0273

The information below is about HL_4V9F_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

3CC2|1|0|U|2563
3CC2|1|0|G|2564
3CC2|1|0|C|2565
3CC2|1|0|A|2566
3CC2|1|0|G|2567
3CC2|1|0|A|2568
3CC2|1|0|A|2569
3CC2|1|0|G|2570

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain E

50S ribosomal protein L6P