HL_3CC2_068

3D structure

PDB id

3CC2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with rrnA Sequence for the 23S rRNA and Genome-derived Sequences for r-Proteins

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUGAACGCAUCUAAG

Length

15 nucleotides

Bulged bases

3CC2|1|0|G|2786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CC2_068 not in the Motif Atlas

Homologous match to HL_4V9F_068

Geometric discrepancy: 0.0262

The information below is about HL_4V9F_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

3CC2|1|0|C|2780
3CC2|1|0|U|2781
3CC2|1|0|G|2782
3CC2|1|0|A|2783
3CC2|1|0|A|2784
3CC2|1|0|C|2785
3CC2|1|0|G|2786
3CC2|1|0|C|2787
3CC2|1|0|A|2788
3CC2|1|0|U|2789
3CC2|1|0|C|2790
3CC2|1|0|U|2791
3CC2|1|0|A|2792
3CC2|1|0|A|2793
3CC2|1|0|G|2794

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain E

50S ribosomal protein L6P

Chain J

50S ribosomal protein L13P