HL_3CC4_012

3D structure

PDB id

3CC4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal Structure of Anisomycin Bound to the 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GUGACAACC

Length

9 nucleotides

Bulged bases

3CC4|1|0|G|336, 3CC4|1|0|A|337, 3CC4|1|0|C|338

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CC4_012 not in the Motif Atlas

Homologous match to HL_4V9F_012

Geometric discrepancy: 0.0529

The information below is about HL_4V9F_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.4

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

16

Unit IDs

3CC4|1|0|G|334
3CC4|1|0|U|335
3CC4|1|0|G|336
3CC4|1|0|A|337
3CC4|1|0|C|338
3CC4|1|0|A|339
3CC4|1|0|A|340
3CC4|1|0|C|341
3CC4|1|0|C|342

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4P

Chain T

50S ribosomal protein L24P