HL_3CCJ_010

3D structure

PDB id

3CCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation C2534U

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UUGGAAUA

Length

8 nucleotides

Bulged bases

3CCJ|1|0|U|318

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CCJ_010 not in the Motif Atlas

Homologous match to HL_4V9F_010

Geometric discrepancy: 0.0993

The information below is about HL_4V9F_010

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_13999.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

21

Unit IDs

3CCJ|1|0|U|312
3CCJ|1|0|U|313
3CCJ|1|0|G|314
3CCJ|1|0|G|315
3CCJ|1|0|A|316
3CCJ|1|0|A|317
3CCJ|1|0|U|318
3CCJ|1|0|A|319

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain C

50S ribosomal protein L4P

Chain T

50S ribosomal protein L24P

Chain Y

50S ribosomal protein L32e