HL_3CCJ_018
3D structure
- PDB id
- 3CCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation C2534U
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UUUUG(1MA)AAAA
- Length
- 10 nucleotides
- Bulged bases
- 3CCJ|1|0|A|631
- QA status
- Modified nucleotides: 1MA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3CCJ_018 not in the Motif Atlas
- Homologous match to HL_4V9F_018
- Geometric discrepancy: 0.0885
- The information below is about HL_4V9F_018
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 96
Unit IDs
3CCJ|1|0|U|623
3CCJ|1|0|U|624
3CCJ|1|0|U|625
3CCJ|1|0|U|626
3CCJ|1|0|G|627
3CCJ|1|0|1MA|628
3CCJ|1|0|A|629
3CCJ|1|0|A|630
3CCJ|1|0|A|631
3CCJ|1|0|A|632
Current chains
- Chain 0
- 23S RIBOSOMAL RNA
Nearby chains
- Chain B
- 50S ribosomal protein L3P
- Chain L
- 50S ribosomal protein L15P
- Chain Y
- 50S ribosomal protein L32e
Coloring options: