HL_3CCL_068

3D structure

PDB id

3CCL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation U2535C. Density for Anisomycin is visible but not included in model.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUGAACGCAUCUAAG

Length

15 nucleotides

Bulged bases

3CCL|1|0|G|2786, 3CCL|1|0|C|2790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CCL_068 not in the Motif Atlas

Homologous match to HL_4V9F_068

Geometric discrepancy: 0.0356

The information below is about HL_4V9F_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

10

Unit IDs

3CCL|1|0|C|2780
3CCL|1|0|U|2781
3CCL|1|0|G|2782
3CCL|1|0|A|2783
3CCL|1|0|A|2784
3CCL|1|0|C|2785
3CCL|1|0|G|2786
3CCL|1|0|C|2787
3CCL|1|0|A|2788
3CCL|1|0|U|2789
3CCL|1|0|C|2790
3CCL|1|0|U|2791
3CCL|1|0|A|2792
3CCL|1|0|A|2793
3CCL|1|0|G|2794

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain E

50S ribosomal protein L6P

Chain J

50S ribosomal protein L13P