HL_3CCV_012

3D structure

PDB id

3CCV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation G2616A

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUGACAACC

Length

9 nucleotides

Bulged bases

3CCV|1|0|G|336, 3CCV|1|0|A|337, 3CCV|1|0|C|338

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CCV_012 not in the Motif Atlas

Homologous match to HL_4V9F_012

Geometric discrepancy: 0.0591

The information below is about HL_4V9F_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.3

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

15

Unit IDs

3CCV|1|0|G|334
3CCV|1|0|U|335
3CCV|1|0|G|336
3CCV|1|0|A|337
3CCV|1|0|C|338
3CCV|1|0|A|339
3CCV|1|0|A|340
3CCV|1|0|C|341
3CCV|1|0|C|342

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain C

50S ribosomal protein L4P

Chain T

50S ribosomal protein L24P