HL_3CD6_037

3D structure

PDB id

3CD6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-cystal of large Ribosomal Subunit mutant G2616A with CC-Puromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

3CD6|1|0|U|1505, 3CD6|1|0|U|1506

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CD6_037 not in the Motif Atlas

Homologous match to HL_4V9F_037

Geometric discrepancy: 0.0468

The information below is about HL_4V9F_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

14

Unit IDs

3CD6|1|0|G|1498
3CD6|1|0|U|1499
3CD6|1|0|U|1500
3CD6|1|0|A|1501
3CD6|1|0|A|1502
3CD6|1|0|U|1503
3CD6|1|0|A|1504
3CD6|1|0|U|1505
3CD6|1|0|U|1506
3CD6|1|0|C|1507

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain P

50S ribosomal protein L19e

Chain S

50S ribosomal protein L23P