HL_3CF5_006

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

3CF5|1|X|A|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CF5_006 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.1901

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

3CF5|1|X|G|171
3CF5|1|X|A|172
3CF5|1|X|A|173
3CF5|1|X|A|174
3CF5|1|X|C|175
3CF5|1|X|A|176
3CF5|1|X|U|177
3CF5|1|X|C|178

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain I

50S RIBOSOMAL PROTEIN L15

Chain U

50S RIBOSOMAL PROTEIN L28