HL_3CF5_016

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CCUUAUGCG

Length

9 nucleotides

Bulged bases

3CF5|1|X|U|554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3CF5_016 not in the Motif Atlas

Geometric match to HL_4V9F_019

Geometric discrepancy: 0.2756

The information below is about HL_4V9F_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42293.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

5

Unit IDs

3CF5|1|X|C|552
3CF5|1|X|C|553
3CF5|1|X|U|554
3CF5|1|X|U|555
3CF5|1|X|A|556
3CF5|1|X|U|557
3CF5|1|X|G|558
3CF5|1|X|C|559
3CF5|1|X|G|560

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain N

50S RIBOSOMAL PROTEIN L20

Chain O

50S RIBOSOMAL PROTEIN L21